View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_37 (Length: 251)
Name: NF11514_high_37
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_37 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 40464458 - 40464667
Alignment:
| Q |
18 |
agactcgctagttcgatcggtaattcttttgacatgtgccttaatgaatcacctattggaatttaaattccacaccatccatgagaaaaatattggagct |
117 |
Q |
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| T |
40464458 |
agactcgctagtttgaccggtaattcttttgacatgtgccttaatgaatcacctattggaatttaaattccacaccatccatgagaaaaatatttgagct |
40464557 |
T |
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| Q |
118 |
agaaagaaggttgtaccaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464558 |
agaaagaaggttgtaccaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttct |
40464657 |
T |
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| Q |
218 |
cctactgttt |
227 |
Q |
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|||||||||| |
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| T |
40464658 |
cctactgttt |
40464667 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 21626732 - 21626639
Alignment:
| Q |
132 |
accaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgt |
225 |
Q |
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| T |
21626732 |
accaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccactgt |
21626639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 77801 - 77709
Alignment:
| Q |
135 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttt |
227 |
Q |
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| T |
77801 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgttt |
77709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 40888483 - 40888575
Alignment:
| Q |
135 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttt |
227 |
Q |
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| T |
40888483 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgttt |
40888575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 25026912 - 25026961
Alignment:
| Q |
167 |
ctagacatttcagctttcctttgatgcatgtcagctactgctttcacttc |
216 |
Q |
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| T |
25026912 |
ctagccatttcagctttcctttgatgcatatcagatacagctctcacttc |
25026961 |
T |
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