View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11514_high_47 (Length: 237)

Name: NF11514_high_47
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11514_high_47
NF11514_high_47
[»] chr5 (11 HSPs)
chr5 (153-223)||(33936599-33936669)
chr5 (155-216)||(33959207-33959268)
chr5 (1-68)||(27514374-27514436)
chr5 (1-61)||(10476407-10476472)
chr5 (1-45)||(19914485-19914529)
chr5 (25-61)||(5131276-5131312)
chr5 (1-36)||(43259774-43259809)
chr5 (27-61)||(43259866-43259900)
chr5 (25-61)||(6644812-6644848)
chr5 (26-69)||(22920914-22920955)
chr5 (25-69)||(27946961-27947005)
[»] chr6 (5 HSPs)
chr6 (1-61)||(20836794-20836854)
chr6 (1-60)||(12852123-12852182)
chr6 (1-36)||(18271854-18271889)
chr6 (24-60)||(18271892-18271928)
chr6 (25-61)||(20836696-20836732)
[»] chr4 (11 HSPs)
chr4 (1-61)||(10395307-10395367)
chr4 (1-61)||(43364106-43364166)
chr4 (29-68)||(23780448-23780487)
chr4 (6-58)||(23689245-23689297)
chr4 (1-61)||(42540317-42540372)
chr4 (1-36)||(7672695-7672730)
chr4 (1-43)||(19677851-19677893)
chr4 (1-42)||(327157-327198)
chr4 (25-61)||(4621933-4621969)
chr4 (25-61)||(18740098-18740134)
chr4 (25-61)||(23780311-23780347)
[»] chr2 (5 HSPs)
chr2 (1-61)||(27080923-27080983)
chr2 (1-43)||(5722933-5722975)
chr2 (1-36)||(33381912-33381947)
chr2 (1-61)||(1483960-1484020)
chr2 (13-58)||(14108607-14108652)
[»] chr7 (10 HSPs)
chr7 (10-61)||(27305666-27305717)
chr7 (4-61)||(10596203-10596260)
chr7 (4-44)||(10596070-10596110)
chr7 (2-36)||(19367271-19367305)
chr7 (2-35)||(4922578-4922611)
chr7 (25-69)||(19367190-19367234)
chr7 (26-61)||(23777120-23777155)
chr7 (1-36)||(43951392-43951427)
chr7 (15-53)||(42731190-42731228)
chr7 (25-61)||(23777250-23777286)
[»] chr3 (5 HSPs)
chr3 (1-60)||(55216685-55216744)
chr3 (1-46)||(54801792-54801837)
chr3 (1-40)||(29630072-29630111)
chr3 (1-36)||(33186188-33186223)
chr3 (1-33)||(40654233-40654265)
[»] chr8 (4 HSPs)
chr8 (1-61)||(30595575-30595635)
chr8 (1-63)||(387723-387780)
chr8 (1-43)||(18605352-18605394)
chr8 (25-69)||(18605273-18605317)
[»] scaffold0024 (1 HSPs)
scaffold0024 (24-68)||(60220-60264)
[»] chr1 (5 HSPs)
chr1 (1-61)||(8812528-8812583)
chr1 (1-43)||(47930895-47930937)
chr1 (1-44)||(5993732-5993775)
chr1 (1-36)||(32567239-32567274)
chr1 (27-61)||(45376452-45376486)


Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 33936599 - 33936669
Alignment:
Q  153 tgtcatattttgaatttattttagagatcatggttaggccgagttaaatatccctacaaatagcatataag 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  33936599 tgtcatattttgaatttattttagagatcatggttaggctgagttaaatatccctacgaatagcatataag 33936669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 33959207 - 33959268
Alignment:
Q  155 tcatattttgaatttattttagagatcatggttaggccgagttaaatatccctacaaatagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33959207 tcatattttgaatttattttagagatcatggttaggccgagttaaatatccctacaaatagc 33959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27514436 - 27514374
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactgaactgtt 68  Q
    ||||||||||||||||||||||||||||||||     |||||||| |||||||||||||| |||||||    
T  27514436 caaatgaaattgaattttagttaccgaactga-----actgtttcgaatcgaactgaacttaactgtt 27514374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10476472 - 10476407
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaact-----gaactgtttcaaatcgaactgaactg 61  Q
    |||| ||||||||||||||||||||||||||||||     |||||||||| |||||||||||||||    
T  10476472 caaacgaaattgaattttagttaccgaactgaactgaatcgaactgtttcgaatcgaactgaactg 10476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19914485 - 19914529
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttc 45  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  19914485 caaatgaaattgaattttagttaccgaactaaactgaactctttc 19914529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 5131312 - 5131276
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5131312 cgaactgaactgaactgtttcaaaccgaactgaactg 5131276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43259809 - 43259774
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43259809 caaatgaaattaaattttagttaccgaactgaactg 43259774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 43259900 - 43259866
Alignment:
Q  27 aactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  43259900 aactgaactgaactgtttcaaaccgaactgaactg 43259866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 6644848 - 6644812
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6644848 cgaactgaactgaactgtttcaaaccgaattgaactg 6644812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 22920914 - 22920955
Alignment:
Q  26 gaactgaactgaactgtttcaaatcgaactgaactgaactgtta 69  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||    
T  22920914 gaactgaactga--tgtttcaaaccgaactgaactgaactgtta 22920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 27946961 - 27947005
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 69  Q
    |||||||| ||||| ||||| |||||||||||||| |||||||||    
T  27946961 cgaactgagctgaattgttttaaatcgaactgaacagaactgtta 27947005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20836794 - 20836854
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  20836794 caaatgaaattgaattttagttaccgaactgaactgaactgtttcgaatcgaattgaactg 20836854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12852182 - 12852123
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaact 60  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||    
T  12852182 caaatgaaattgaattttagttatcaaagtgaaccgaactgtttcaaatcgaactgaact 12852123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18271854 - 18271889
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  18271854 caaatgaaattgaattttagttactgaactgaactg 18271889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 18271892 - 18271928
Alignment:
Q  24 ccgaactgaactgaactgtttcaaatcgaactgaact 60  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  18271892 ccgaactgcactgaactgtttcgaatcgaactgaact 18271928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 20836696 - 20836732
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20836696 cgaactgaacggaactgtttcaaaccgaactgaactg 20836732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10395367 - 10395307
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10395367 caaatgaaattgaattttaattaccgaactgaactgaacagtttcaaatcgaactgaactg 10395307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43364166 - 43364106
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||  |||||||||||||||    
T  43364166 caaatgaaattgaagtttagttaccaaaccgaactgaactgttttgaatcgaactgaactg 43364106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 23780448 - 23780487
Alignment:
Q  29 ctgaactgaactgtttcaaatcgaactgaactgaactgtt 68  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23780448 ctgaactgaactgtttcaaatcgaactgaactgaactgtt 23780487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 23689297 - 23689245
Alignment:
Q  6 gaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaa 58  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  23689297 gaaatcgaattttagttaccgaactgaattgaactgtttcgaatggaactgaa 23689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42540317 - 42540372
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||||||| |||||||||||     ||||||||||||||||| |||||||||||||    
T  42540317 caaatgaaattgagttttagttacc-----gaactgaactgtttcaagtcgaactgaactg 42540372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7672695 - 7672730
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7672695 caaatgaaattgaattttagttaccaaactgaactg 7672730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19677893 - 19677851
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtt 43  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||    
T  19677893 caaaagaaatcgaattttagttaccgaattgaactgaactgtt 19677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 327157 - 327198
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgt 42  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  327157 caaatgaaattgaattttagttacaaaactgaactaaactgt 327198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 4621933 - 4621969
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4621933 cgaactgaactgaactgtttcaaaccgaattgaactg 4621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 18740134 - 18740098
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18740134 cgaactgaactgaattgtttcaaaccgaactgaactg 18740098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 23780311 - 23780347
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||| | ||||||||||    
T  23780311 cgaactgaactgaactgtttcaaaccaaactgaactg 23780347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27080983 - 27080923
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  27080983 caaatgaaattgaattttagttaccaaactgaactgaactgtttcgaatcgaactgaactg 27080923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5722933 - 5722975
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtt 43  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  5722933 caaacgaaattgaattttagttaccgaactgaactgaactgtt 5722975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33381947 - 33381912
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  33381947 caaatgaaattgaattttagttaccgaactgaactg 33381912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1484020 - 1483960
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||| |||||| |||||||| |||| || ||||| ||||||||||||||||||| ||||||    
T  1484020 caaacgaaattaaattttagctaccaaattgaaccgaactgtttcaaatcgaacggaactg 1483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 14108652 - 14108607
Alignment:
Q  13 aattttagttaccgaactgaactgaactgtttcaaatcgaactgaa 58  Q
    |||||||||||||||||||||||||| |||||| || | |||||||    
T  14108652 aattttagttaccgaactgaactgaattgtttcgaaccaaactgaa 14108607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 27305666 - 27305717
Alignment:
Q  10 ttgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27305666 ttgaattttagttaccggactgaactgaactgtttcaaatcgaactgaactg 27305717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 10596203 - 10596260
Alignment:
Q  4 atgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  10596203 atgaaattgaattttagttaccgaactgaactgaactgttttgaatcgaattgaactg 10596260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 10596070 - 10596110
Alignment:
Q  4 atgaaattgaattttagttaccgaactgaactgaactgttt 44  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10596070 atgaaattgaattttagttaccgaactgaactgaactgttt 10596110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 19367271 - 19367305
Alignment:
Q  2 aaatgaaattgaattttagttaccgaactgaactg 36  Q
    |||||||||||||||||||||||||||||||||||    
T  19367271 aaatgaaattgaattttagttaccgaactgaactg 19367305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 4922611 - 4922578
Alignment:
Q  2 aaatgaaattgaattttagttaccgaactgaact 35  Q
    ||||||||||||||||||||||||||||||||||    
T  4922611 aaatgaaattgaattttagttaccgaactgaact 4922578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 19367190 - 19367234
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 69  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  19367190 cgaactgaactgaattgtttcaaacagaactgaactgaactgtta 19367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 23777120 - 23777155
Alignment:
Q  26 gaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23777120 gaactgaactgaactgtttcaaaccgaactgaactg 23777155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43951392 - 43951427
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43951392 caaatgaaattgaattttaattaccgaactgaactg 43951427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 42731190 - 42731228
Alignment:
Q  15 ttttagttaccgaactgaactgaactgtttcaaatcgaa 53  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  42731190 ttttagttaccaaactgaactgaactgtttcgaatcgaa 42731228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 23777250 - 23777286
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  23777250 cgaactgaattgaactgtttcgaatcgaactgaactg 23777286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55216744 - 55216685
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaact 60  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  55216744 caaatgaaattgaattttagttatcgaactgaactggactgtttcgaatcgaactgaact 55216685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54801792 - 54801837
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttca 46  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  54801792 caaacgaaatcgaattttagttaccgaactgaactgaactgtttca 54801837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29630111 - 29630072
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaact 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29630111 caaatgaaattgaattttagttcccgaactgaactgaact 29630072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33186223 - 33186188
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  33186223 caaatgaaattgaattttagttaccgaactgaactg 33186188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40654233 - 40654265
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  40654233 caaatgaaattgaattttagttaccgaactgaa 40654265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30595575 - 30595635
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  30595575 caaatgaaattgaattttagttaccgaattgaactgaactgttttgaatcgaactgtactg 30595635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 387723 - 387780
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactgaa 63  Q
    ||||||||||||||||||||||||  ||   |||||||||||||| |||||||||||||||||    
T  387723 caaatgaaattgaattttagttac--aa---aactgaactgtttcgaatcgaactgaactgaa 387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18605352 - 18605394
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtt 43  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  18605352 caaacgaaatagaattttagttaccaaactgaactgaactgtt 18605394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 18605273 - 18605317
Alignment:
Q  25 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 69  Q
    |||||||||||||||||||||||| |||| | ||| |||||||||    
T  18605273 cgaactgaactgaactgtttcaaaccgaattaaaccgaactgtta 18605317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 60220 - 60264
Alignment:
Q  24 ccgaactgaactgaactgtttcaaatcgaactgaactgaactgtt 68  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  60220 ccgaactgaactgaactgtttcgaatcgaactgaactgaattgtt 60264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8812528 - 8812583
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||    
T  8812528 caaatgaaattgaattttagttacc-----gaactgaactgtttcaaattgaactgaactg 8812583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47930895 - 47930937
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgtt 43  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  47930895 caaacgaaattgaattttagttaccgaactgaactggactgtt 47930937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5993732 - 5993775
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactgaactgttt 44  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||    
T  5993732 caaacgaaatcgaattatagttaccgaactgaactgaactgttt 5993775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32567239 - 32567274
Alignment:
Q  1 caaatgaaattgaattttagttaccgaactgaactg 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  32567239 caaatgaaattgaattttagttaccgaattgaactg 32567274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 45376452 - 45376486
Alignment:
Q  27 aactgaactgaactgtttcaaatcgaactgaactg 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  45376452 aactgaactgaactgtttcaaaccgaactgaactg 45376486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University