View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_49 (Length: 220)
Name: NF11514_high_49
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 43082617 - 43082760
Alignment:
| Q |
1 |
tagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtcaatccgttaacaaatg |
100 |
Q |
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| T |
43082617 |
tagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtcaatccgttaacaaaag |
43082716 |
T |
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| Q |
101 |
gctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
144 |
Q |
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| T |
43082717 |
gctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
43082760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 43082759 - 43082805
Alignment:
| Q |
165 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaatata |
211 |
Q |
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| T |
43082759 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaatata |
43082805 |
T |
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