View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_5 (Length: 520)
Name: NF11514_high_5
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 38 - 520
Target Start/End: Original strand, 37490844 - 37491326
Alignment:
| Q |
38 |
ttgtgtcgagttcaagtaattttagttgtaatttgcagtcattgctagtctttgtctagtaatttggtaaagtctgaagcaaatggacatatttttgtaa |
137 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37490844 |
ttgtgtcgagttcaggtaattttagttgtaatttgcagtcattgctagtctttgtctagtaatttggtaaagtctgaagcaaatggacatatttttgtaa |
37490943 |
T |
|
| Q |
138 |
ttatgtgggtgttagttaaaatttataacaccaaaatcgcactgagatactatgtgaatccttcttgcaggttttccctggaataaaagactcgtatcag |
237 |
Q |
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||||||| |||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
37490944 |
ttatgtgcgtgttagttaaaatttatgacaccaaa-tcgtaatgagatactatgtgaatccttcttgcaggtttttcctagaataaaagactcgtatcag |
37491042 |
T |
|
| Q |
238 |
gttaactttttaataaacttcannnnnnnncgaacatgcatgtttgttataatttaaatttatatgcagatgttaatg-ttttttaatgaaatcttagac |
336 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |
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| T |
37491043 |
gttaactttttaataaacttcattttttttcgaacatggatgtttgttataatttaaatttatatgcagatgtaaatgattttttaatgaaatctttgac |
37491142 |
T |
|
| Q |
337 |
gcagggaggaatcatgatatttgccagttcttactttgaatttattcgaatctgaannnnnnngaagtcccagaatgccttcttctgtctgcttggggag |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
37491143 |
gcagggaggaatcatgatatttgccagttcttactttgaatttattcgaatccgaatttttttgaagtcccagaatgcctccttctgtctgcttggggag |
37491242 |
T |
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| Q |
437 |
taaggaaccatttcctttattttgccattacagctctaatctatgtagctctcgtgttccattgtaatttatgtgtggatcttt |
520 |
Q |
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| T |
37491243 |
taaggaaccatttcctttattttgccattacagctctaatctatgtagctctcgtgttccattgtaatttatgtgtggatcttt |
37491326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 134 - 520
Target Start/End: Original strand, 15991270 - 15991658
Alignment:
| Q |
134 |
gtaattatgtgggtgttagttaaaatttataacaccaaaatcgcactgagatactatgtgaatccttcttgcaggttttccctggaataaaagactcgta |
233 |
Q |
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||||||||||| ||||||| ||||| |||| ||||||| | | |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
15991270 |
gtaattatgtgcgtgttagctaaaacttatg-caccaaatt-gtactgagatactatgtgaatcattcttgcaggttttcccaagaataaaagactctga |
15991367 |
T |
|
| Q |
234 |
tcaggttaactttttaataaacttcannnnnnnncgaacatgcatgtttgttataatttaaatttatatgcagatgttaatg-ttttttaatgaaatctt |
332 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
15991368 |
tcaggttaacattttaataaacttcattttctt-cgaacatgcatgtttgttataatttaaatttatatgcagatgttaatggttttttaatgaaatatt |
15991466 |
T |
|
| Q |
333 |
agacgcagggaggaatcatgatatttgccagttcttactttgaatttattcgaatctgaannnnnnngaagtcccagaatgccttcttctgtctgcttgg |
432 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| |||| |
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| T |
15991467 |
tgatgcagggaggaatcatgatatttgccagttcttacttcgaatttattcgaatccgaaattttttgaagtcccagaatgcctccttctgtctggttgg |
15991566 |
T |
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| Q |
433 |
ggagtaaggaaccatttcctttattttgccattacagctctaatct----atgtagctctcgtgttccattgtaatttatgtgtggatcttt |
520 |
Q |
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| T |
15991567 |
ggagtaaggaaccatttcctttattttgccattacagctctaatcttaaaatgtagctctcgtgttccattgtaatttatgtgtggatcttt |
15991658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 178 - 520
Target Start/End: Complemental strand, 3210108 - 3209760
Alignment:
| Q |
178 |
actgagatactatgtgaatccttcttgcaggttttccctggaataaaagactcgtatcaggttaactttttaataaacttcannnnnnnncgaacatgca |
277 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
3210108 |
actgagatactatgtgaatcattcttgcaggttttcccaagaataaatgactctgatcaggttaactttttaataaacttcatgtttttt-gaacatgca |
3210010 |
T |
|
| Q |
278 |
-tgtttgttataatttaaatttatatg-cagatgttaatg-ttttttaatgaaatcttagacgcagggaggaatcatgatatttgccagttcttactttg |
374 |
Q |
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| T |
3210009 |
gtgtttgttataattttaatttttataacagatgttaatgattttttaatgaaatctttgatgcagggaggaaccatgatatttgccagttcttacttag |
3209910 |
T |
|
| Q |
375 |
aatttattcgaatctgaannnnnnngaagtcccagaatgccttcttctgtctgcttggggagtaaggaaccatttcctttattttgccattacagctcta |
474 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3209909 |
aatttattcgaatccgaaattttttgaagtcccagaatgcctccttctgtctgtttggggagtaaggaaccatttcctttattgtgccattacagctcta |
3209810 |
T |
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| Q |
475 |
atct----atgtagctctcgtgttccattgtaatttatgtgtggatcttt |
520 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3209809 |
atcttaaaatgtagctctcgtgtttcattgtaatttatgtgtggatcttt |
3209760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 15991122 - 15991193
Alignment:
| Q |
67 |
aatttgcagtcattgctagtctttgtctagtaatttgg-taaagtctgaagcaaatggacatatttttgtaa |
137 |
Q |
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|||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15991122 |
aatttgcagtcattgctagtctttttcgagtaatttggctaaagtctgaagcaaatggacatatttttgtaa |
15991193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 3210303 - 3210236
Alignment:
| Q |
67 |
aatttgcagtcattgctagtctttgtctagtaatttgg-taaagtctgaagcaaatggacatattttt |
133 |
Q |
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||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
3210303 |
aatttgcagtcattgctagtctttgtcgagtagtttggctaaagtctgaagcaaatggacatattttt |
3210236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 3210350 - 3210322
Alignment:
| Q |
38 |
ttgtgtcgagttcaagtaattttagttgt |
66 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3210350 |
ttgtgtcgagttcaagtaattttagttgt |
3210322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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