View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_50 (Length: 218)
Name: NF11514_high_50
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 43583539 - 43583347
Alignment:
| Q |
5 |
gaggaggagcagagatatcagcgagggaatagcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaaga |
104 |
Q |
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| T |
43583539 |
gaggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaaga |
43583440 |
T |
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| Q |
105 |
gatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggag |
197 |
Q |
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| T |
43583439 |
gatggctcctacacatccataaactggatccctaactcgtgcttcggcttcataagcaagggagttcacagcatcctccctttggtgagggag |
43583347 |
T |
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Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 34675520 - 34675354
Alignment:
| Q |
35 |
agcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatc |
134 |
Q |
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||||||||||||||| || |||| || |||||||||||||| || ||||||||||| || || |||||||| || || ||||| |||||||| ||||| |
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| T |
34675520 |
agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatc |
34675421 |
T |
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| Q |
135 |
cctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagt |
201 |
Q |
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| T |
34675420 |
tctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagt |
34675354 |
T |
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