View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_6 (Length: 512)
Name: NF11514_high_6
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 4 - 482
Target Start/End: Complemental strand, 41340646 - 41340167
Alignment:
| Q |
4 |
aatgagttggatccaaatataatttatgataaatattatgacgcaattttcgtgtagccgaccctatttagggggctaaggattgatgttgttggggagg |
103 |
Q |
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| T |
41340646 |
aatgagttggatccaaatataatttatgataaatattatgacgcatttttcgtgtagccgaccctatttagtgggctaaggattgatgttgttggtgagg |
41340547 |
T |
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| Q |
104 |
ggttatccaatacaattaggtgtttaatttcgatttcattacaataattttaagataaattttatttaacttataaaaagtaacacttttcttattcaca |
203 |
Q |
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| T |
41340546 |
gtttatccaatacaattaggtgtttaatttcgatttcattacaataattttaagataaattttatttaacttataaaaagtaacacttttcttattcaca |
41340447 |
T |
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| Q |
204 |
aaataaattcttagtnnnnnnngcgaacaaaagaagt-agtgactctcttcgatataaatacaacggctctgcctttgccttagggtttgtaattttaga |
302 |
Q |
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| T |
41340446 |
aaataaattcttagttaaaaaaacgaacaaaagaagagagtgactctcttcgatataaatacaacggctctgcctttgccttagggtttgtaattttaga |
41340347 |
T |
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| Q |
303 |
ccaatttcattcaactttagtcattagttcaatgctagaaatacaaacctagccgaagaatacgactcgggactaaatttgttgtcaagcgacttgtgtt |
402 |
Q |
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| T |
41340346 |
ccaatttcattcaacttcagtcattagttcaatgctagaaacacaaacctagccgaagaatacgactcgggactaaatttgttgtcaggcgacttgcgtt |
41340247 |
T |
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| Q |
403 |
tgctcgacagagtgatatatccattttattttgttaaattagggactaaacctagccaaagaatacgactctggactaaa |
482 |
Q |
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| T |
41340246 |
tgctcgacagagtgatatatccattttattttgttaaattagggactaaacctagccgaagaatacgacttgggactaaa |
41340167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 444 - 502
Target Start/End: Complemental strand, 41340175 - 41340117
Alignment:
| Q |
444 |
gggactaaacctagccaaagaatacgactctggactaaatttgttctcaaccttctctg |
502 |
Q |
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| T |
41340175 |
gggactaaacctagccgaagaatacgactcgggactaaatttgttctcaaccttctctg |
41340117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 41340169 - 41340126
Alignment:
| Q |
347 |
aaacctagccgaagaatacgactcgggactaaatttgttgtcaa |
390 |
Q |
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| T |
41340169 |
aaacctagccgaagaatacgactcgggactaaatttgttctcaa |
41340126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 46749727 - 46749779
Alignment:
| Q |
1 |
agcaatgagttggatccaaatataatttatgat-aaatattatgacgcaattt |
52 |
Q |
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| T |
46749727 |
agcaatgagttggattcaaatatgatttatgataaaatattatgacgtaattt |
46749779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Complemental strand, 41340302 - 41340264
Alignment:
| Q |
450 |
aaacctagccaaagaatacgactctggactaaatttgtt |
488 |
Q |
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| T |
41340302 |
aaacctagccgaagaatacgactcgggactaaatttgtt |
41340264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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