View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_1 (Length: 745)
Name: NF11514_low_1
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 45595602 - 45596074
Alignment:
| Q |
1 |
accaagaaacaccaataaagtcttgtattttctaaccttgctcattaaaaagggatagcgggatcgcaattcagtcatatgggattcacccccatatatc |
100 |
Q |
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| T |
45595602 |
accaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccatatatc |
45595701 |
T |
|
| Q |
101 |
tcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggccc |
200 |
Q |
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| T |
45595702 |
tcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggccc |
45595801 |
T |
|
| Q |
201 |
tctcttcttttggattgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtcatttcaaacatcaggaagaaaaatta |
300 |
Q |
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| T |
45595802 |
tctcttcttttggatcgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtcatttcaaacatcaggaagaaaaatta |
45595901 |
T |
|
| Q |
301 |
aactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataaatcatgcgtgcagccgctgaatgcaa |
400 |
Q |
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| T |
45595902 |
aactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataaatcatgcgtgcagccgctgaatgcaa |
45596001 |
T |
|
| Q |
401 |
gcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccaccaatatctg |
473 |
Q |
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| T |
45596002 |
gcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccaccaatatctg |
45596074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 540 - 727
Target Start/End: Original strand, 45596141 - 45596328
Alignment:
| Q |
540 |
ccaacaagagtttgtatctactgatataccttccccatctgttcaatgtgaggagaaaaacgaagagcttcataacaagcacggcagcgaagcttttgaa |
639 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45596141 |
ccaacaagagtttgtatctactgatataccttccccatctgttcaatgcgaggagaaaaacgaagagcttcataacaagcacggcagcgaagcttttgaa |
45596240 |
T |
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| Q |
640 |
tatcttgaggtagatggttatttgctagtcgagaatctgatttggaagcttgaataacctttagtcaatcgtaagaaaattgtagagt |
727 |
Q |
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| T |
45596241 |
tatcttgaggtagatggttatttgctagtcgagaatctgatttggaagcttgaataacctttagtcaatcgtaagaaaattgtagagt |
45596328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 27151335 - 27151508
Alignment:
| Q |
35 |
accttgctcattaaaaagggatagcgggatcgcaattcagtcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcag |
134 |
Q |
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| T |
27151335 |
accttgctcattaacaatggataacgggatcgcagttcagccatatgggactcacccccataaatctctccagcagcaatatatatcggcgtctttgatg |
27151434 |
T |
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| Q |
135 |
ggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggccctctcttct |
208 |
Q |
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| T |
27151435 |
gatatccaagagcagtaagaaaaattccaacttcctttggtgttaaggggcaaaaccctttggacctctgttct |
27151508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 563 - 699
Target Start/End: Original strand, 27151886 - 27152022
Alignment:
| Q |
563 |
atataccttccccatctgttcaatgtgaggagaaaaacgaagagcttcataacaagcacggcagcgaagcttttgaatatcttgaggtagatggttattt |
662 |
Q |
| |
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||||||||| || || |||||||| ||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||| ||||||||| ||| || |
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| T |
27151886 |
atatacctttcctatttgttcaatacgaggagagaaacggagtgcttcatagcaagctcggcaacgaagcttttgaatgtctggaggtagattgttgttc |
27151985 |
T |
|
| Q |
663 |
gctagtcgagaatctgatttggaagcttgaataacct |
699 |
Q |
| |
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| T |
27151986 |
gctagccgtgaatcggattttgaagcacgaataacct |
27152022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 27151677 - 27151723
Alignment:
| Q |
370 |
gataaatcatgcgtgcagccgctgaatgcaagcatatccttctcata |
416 |
Q |
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| T |
27151677 |
gataaatcatgcgtacacccactaaatgcaagcatatccttctcata |
27151723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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