View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_10 (Length: 476)
Name: NF11514_low_10
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 39 - 476
Target Start/End: Complemental strand, 41966850 - 41966413
Alignment:
| Q |
39 |
attcataataatgcctcggagacaatgtatgaatctgttttctatagctattgttatttctggaaggtttaacttcaacctcttttaggtaacaatggct |
138 |
Q |
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| T |
41966850 |
attcataataatgcctcggagacaatgtatgaatctgttttctatagttatcgttatttctggaaggtttaaattcaacctcttttaggtaacaatggct |
41966751 |
T |
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| Q |
139 |
ccattttccttgctgcatgttcaaaaggcttctcatcttgatacacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaagaga |
238 |
Q |
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| T |
41966750 |
ccattttccttgctgcatgttgaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaaaaga |
41966651 |
T |
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| Q |
239 |
atgatcttcttttccttcacctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgttcattcatcttattcttccaatagtct |
338 |
Q |
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| T |
41966650 |
atgatcttcttttccttcatctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgttcattcatcttattcttccaatagtct |
41966551 |
T |
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| Q |
339 |
cctaaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaatagagttggtgtatatttagtttcacttttgga |
438 |
Q |
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| T |
41966550 |
cctaaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaatagagttggtgtatatttagtttcacttttaga |
41966451 |
T |
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| Q |
439 |
gacgacaaaattgatgtagaattgattttgatatattt |
476 |
Q |
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| T |
41966450 |
gacgacaaaattgatgtagaattaattttgatatattt |
41966413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 1228238 - 1227849
Alignment:
| Q |
18 |
atatcatggcatagttcacatattcataataatgcctcggagacaat------gtatgaatctgttttctatagctattgttatttctggaaggtttaac |
111 |
Q |
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| T |
1228238 |
atatcatggcatagttcatatattcataataatgctttggagacaattttaatgtatgaatctattttctatagttattgttatttctggaaggtttaac |
1228139 |
T |
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| Q |
112 |
ttcaacctcttttaggtaacaatggctccattttccttgctgcatgttcaaaaggcttctcatcttgatacacatgggtgtgatataatatgatattagg |
211 |
Q |
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| T |
1228138 |
ttcaacccctttttggtaacaatgactccattttccttgctgcatgttcaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattagg |
1228039 |
T |
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| Q |
212 |
atttacatcaaagtcggtagtaagagaatgatcttcttttccttcacctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgt |
311 |
Q |
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| T |
1228038 |
atttacatcaaagtcggtagtaaaagaatgatcttcttttccttcacctaatgcttttggaacttgaataaagtttttaattgcttcaggcataggttgc |
1227939 |
T |
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| Q |
312 |
tcattcatcttattcttccaatagtctcctaaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaa |
405 |
Q |
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| T |
1227938 |
ttattcatcttattcttccaaaggtctcctagatcttttcttgcatagctcatgttagcaacctat----tcatttcaacagagataaagttaa |
1227849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 54435263 - 54435306
Alignment:
| Q |
183 |
acatgggtgtgatataatatgatattaggatttacatcaaagtc |
226 |
Q |
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| T |
54435263 |
acatgggtgtgatataatatgacattaggctttacatcaaagtc |
54435306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 26235689 - 26235756
Alignment:
| Q |
291 |
attgcttcaggcataggttgttcattcatcttattcttccaatagtctcctaaatcttttcttgcata |
358 |
Q |
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| T |
26235689 |
attgcttcaggcataggttggtcattcatcatattcttccaataacctcccaagtcttttcttgcata |
26235756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 26235599 - 26235642
Alignment:
| Q |
183 |
acatgggtgtgatataatatgatattaggatttacatcaaagtc |
226 |
Q |
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| T |
26235599 |
acatgtgtgtgatataatatgacattaggctttacatcaaagtc |
26235642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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