View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_11 (Length: 472)
Name: NF11514_low_11
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 45122482 - 45122919
Alignment:
| Q |
20 |
attttgagtaaaatgttatcctcatcgtggaaacaatatccgagagtcaccaatatctggcactctctaatggagcagtcatgggaaaatgtttggcctt |
119 |
Q |
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| T |
45122482 |
attttgagtaaaaagttatcctcatcgtggaaacaatatacgagagtcaccaatatctggcactctcttatggagcagtcatgggaaaatgtttggcctt |
45122581 |
T |
|
| Q |
120 |
ttcaaacggtaatgagttccagcataaattgatacaaatatattaattgtgtttttcattacgtatagtataatatagtactttgtttaattcaaacgat |
219 |
Q |
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| T |
45122582 |
ttcaaacggtaatgagttccagcataaattgatacaaatatattaattgcgtttttcat-acgtatagtataatatagtactttgtttaattcaaacgat |
45122680 |
T |
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| Q |
220 |
tttataggaaatggatgtggaatatttgttagagatgtgccacgaagaaaaagagtttgttcgtgacttcatggcacagccggtagctggagctgcagtt |
319 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45122681 |
tttacaggaaatgggtgtggaatatttgttagagatgtgccacgaagaaaaagagtttattcgtgacttcatggcacagccggtagctggagctgccgtt |
45122780 |
T |
|
| Q |
320 |
gccgccaccgagagtagcagtgagatgattgtagtctctgatgagtcacctgagcttcttcctccgtccacatcctctagagcttgcattatctctttga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45122781 |
gccgccaccgagagtagcagtgagatgattgtagtctctgatgagtcacctgagcttcttcctccgtccacatcctctagagcttgcattatctctttag |
45122880 |
T |
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| Q |
420 |
ataactccgcggcaataccgttaccagctgtgatgtcca |
458 |
Q |
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| T |
45122881 |
ataactccgcggcaataccgttaccagctgtgatgtcca |
45122919 |
T |
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