View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_12 (Length: 458)
Name: NF11514_low_12
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 11476064 - 11475623
Alignment:
| Q |
1 |
acattgttttcatccacaaaggctatgttccttacaacacaagaatgcttcttttacaggaaatctttgatagtatccaagatactgaattttggtatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
11476064 |
acattgttttcatccacaaaggctatgttccttacaacgcaagaatgcttcttttacaggaaatctttgatagtttccaggatactgaattttggtatgc |
11475965 |
T |
|
| Q |
101 |
agaacaagggagcatgtcagggaattcgaaccgtagttcacattcgaatgcaggttcgaaggcaggctcgtttcgaattattgctcaaagaaaagatgag |
200 |
Q |
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| T |
11475964 |
agaacaagggagcatgtcagggaattcgaaccgtagttcacattcgaatgcaggttcgaaggcaggctcgtttcgaattattgctcaaagaaaagatgag |
11475865 |
T |
|
| Q |
201 |
aaatggtggttgccagttccttgtgttcacactggtggcctctctgataagtcaaggaagcatttgattgagaaaagagattgtgctaatcaaattcata |
300 |
Q |
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| T |
11475864 |
aaatggtggttgccagttccttgtgttcacactggtggcctctctgataagtcaaggaagcatttgattgagaaaagagattgtgctaatcaaattcata |
11475765 |
T |
|
| Q |
301 |
aagcagctatggcaataaatagcagtgttcttgcagagatggacattccagaaacatacatggcaaatcttccaaaggttagtcctcatttggtcatcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475764 |
aagcagctatggcaataaatagcagtgttcttgcagagatggacattccagaaacatacatggcaaatcttccaaaggttagtcctcatttggtcatcca |
11475665 |
T |
|
| Q |
401 |
tttgcttaagacttttgttatttcctaagttgtgtctaaatt |
442 |
Q |
| |
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| T |
11475664 |
tttgcttaagacttttgttatttcctaagttgtgtcttaatt |
11475623 |
T |
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Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 162 - 358
Target Start/End: Original strand, 29299158 - 29299354
Alignment:
| Q |
162 |
gcaggctcgtttcgaattattgctcaaagaaaagatgagaaatggtggttgccagttccttgtgttcacactggtggcctctctgataagtcaaggaagc |
261 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| | |
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| T |
29299158 |
gcagcctcgtttcgaaggattgctcaaaggaaagacgagaaatggtggttgccagttccttgtgttctccctggtggcctctctgagaagtcaaggaaac |
29299257 |
T |
|
| Q |
262 |
atttgattgagaaaagagattgtgctaatcaaattcataaagcagctatggcaataaatagcagtgttcttgcagagatggacattccagaaacata |
358 |
Q |
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| | | |||||||| ||||||||||||||||||| ||||||||| ||||| |||||||| | | |||||||||| || || ||||| |||||||| |
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| T |
29299258 |
accttacagagaaaagggattgtgctaatcaaattcttaaagcagcaatggcgataaatagtaatattcttgcagatatagatattcctgaaacata |
29299354 |
T |
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