View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_13 (Length: 451)
Name: NF11514_low_13
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 72 - 448
Target Start/End: Complemental strand, 52672564 - 52672186
Alignment:
| Q |
72 |
caaggagaaatggttcgttttacaagagattaataaggctgatgttataatctgctgccacagctttgagacttctccgtgccaaattcaaactcactta |
171 |
Q |
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| T |
52672564 |
caaggagaaatggttcgttttacaagagattaataaggctgatgttataatctgctgccacagctttgagacttatccgtgccaaattcaaactcactta |
52672465 |
T |
|
| Q |
172 |
ttcagtttcattgccgattcaatccaccgtttg-tatatattatgtatccaggttcattgattcttaatctctannnnnnnnnnnnnnn--atttaattg |
268 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
52672464 |
ttcagtttcattgccgattcaatccaccgtttggtatatattgtgtatccaggttcattgattcttaatctctgttttttttttattatttatttaattg |
52672365 |
T |
|
| Q |
269 |
atgcaaggctttatcttggaaaaaacaaacacttcttattgttcccctcctcgaaatagggtttcatttgtgttctttgttcactttctcattccttatt |
368 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
52672364 |
atgcaagtctttatcttggaaaaaacaaacacttcttattgttcccctcctcgaaatagggtttcatttgtgttctttcttcactttctcatttcttatt |
52672265 |
T |
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| Q |
369 |
tgttgctgtttcatacacacacaaacacttacacattgagaaatgcagccttcttatttctctgtcaattcatctcactc |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
52672264 |
tgttgctgtttcatacacacacaaacacttacacattgagaaatgcagccttctt-tttctctgtcaattgatctcactc |
52672186 |
T |
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