View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11514_low_14 (Length: 449)

Name: NF11514_low_14
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11514_low_14
NF11514_low_14
[»] chr2 (2 HSPs)
chr2 (1-433)||(16766233-16766665)
chr2 (352-434)||(33598202-33598284)
[»] chr7 (2 HSPs)
chr7 (345-434)||(39958510-39958599)
chr7 (349-433)||(4035383-4035468)
[»] chr5 (1 HSPs)
chr5 (344-433)||(29367546-29367635)
[»] chr3 (3 HSPs)
chr3 (344-433)||(21985287-21985376)
chr3 (345-433)||(39267644-39267737)
chr3 (370-433)||(41535762-41535824)
[»] chr8 (1 HSPs)
chr8 (345-428)||(13015636-13015718)


Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 16766665 - 16766233
Alignment:
Q  1 ttctagagaaattcctgaatccgagttgtaccctttgtgtcgaacctgatcaaacaaaagagtgagtataagtagtatcattatcaaaaccaactaataa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16766665 ttctagagaaattcctgaatccgagttgttccctttgtgtcgaacctgatcaaacaaaagagtgagtataagtagtatcattatcaaaacca-ctaataa 16766567  T
Q  101 tattataagctgtttttaaactaaaaattccaatagtgtagagatcccatttggggacactgttttcattggctgaagcatttaacttagctatcaagct 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16766566 tattataagctgtttttaaactaaaaattccaatagtggagagatcccatttggggacactgttttcattggctgaagcatttaacttagctatcaagct 16766467  T
Q  201 gcaaatagaatcaggaagaaggttagcaatcatattccaatttcaatcctcattttaaaattaacaatatggtaggaggtgggatttgaatgctcatttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16766466 gcaaatagaatcaggaagaaggttagcaatcatattccaatttcaatcctcattttaaaattaacaatatggtaggaggtgggatttgaatgctcatttg 16766367  T
Q  301 tgtcaacggaaatcacaaagttcaaataatgcttacaaatgtacgtgcttgtttggtttagc--tttttgttagtctagaagcacttctacttcctcaaa 398  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| |||| | ||||||||    
T  16766366 tgtcaacggaaatcacaaagttcaaataatgc-tacaaatgtacgtgcttgtttggtttagctttttttgttagtctagaagcatttctccctcctcaaa 16766268  T
Q  399 agtgaaaaagagcaatttcacacatgtttgttttg 433  Q
    |||||||||||||||||||||||||||||||||||    
T  16766267 agtgaaaaagagcaatttcacacatgtttgttttg 16766233  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 33598284 - 33598202
Alignment:
Q  352 tttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtgaaaaagagcaatttcacacatgtttgttttga 434  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||| |||||    
T  33598284 tttggtttagcttcttgttagtctagaagcacttctacatcctcaagagtgaaaaaaagcaatttcacatatgtttggtttga 33598202  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 434
Target Start/End: Complemental strand, 39958599 - 39958510
Alignment:
Q  345 gtgcttgtttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtgaaaaagagcaatttcacacatgtttgttttga 434  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||    
T  39958599 gtgcttgtttggtttagcttattgttagtctagaagcacttctacatcctcaatagtgaaaaaaagcaatttcacacatgtttggtttga 39958510  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 4035383 - 4035468
Alignment:
Q  349 ttgtttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtg-aaaaagagcaatttcacacatgtttgttttg 433  Q
    |||||||||||||||| ||||||||||||||||| || |||  ||||||||||| ||||| |||||||||||||||||||||||||    
T  4035383 ttgtttggtttagcttcttgttagtctagaagcagttatacaccctcaaaagtgaaaaaaaagcaatttcacacatgtttgttttg 4035468  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 29367635 - 29367546
Alignment:
Q  344 cgtgcttgtttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtgaaaaagagcaatttcacacatgtttgttttg 433  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||    
T  29367635 cgtgcttgtttggtttagcttcttgttagtctagaagcacttctacatcttcaaaagtgaaaaaaagtaatttcacacatgtttgttttg 29367546  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 344 - 433
Target Start/End: Original strand, 21985287 - 21985376
Alignment:
Q  344 cgtgcttgtttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtgaaaaagagcaatttcacacatgtttgttttg 433  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||    
T  21985287 cgtgcttgtttggtttagcttcttgttagtctagaagcacttctacatcttcaaaagtgaaaaaaagtaatttcacacatgtttgttttg 21985376  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 433
Target Start/End: Complemental strand, 39267737 - 39267644
Alignment:
Q  345 gtgcttgtttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtgaa-----aaagagcaatttcacacatgtttgttttg 433  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||     ||| | |||||||||||||||||||||||    
T  39267737 gtgcttgtttggtttagcttcttgttagtctagaagcacttctacatcctcaaaagtgaagaaaaaaaaatcaatttcacacatgtttgttttg 39267644  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 433
Target Start/End: Original strand, 41535762 - 41535824
Alignment:
Q  370 tagtctagaagcacttctacttcctcaaaagtgaaaaagagcaatttcacacatgtttgttttg 433  Q
    ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  41535762 tagtctagaagcaattctacatccccaaaagtgaaaaa-agcaatttcacacatgtttgttttg 41535824  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 13015636 - 13015718
Alignment:
Q  345 gtgcttgtttggtttagctttttgttagtctagaagcacttctacttcctcaaaagtgaaaaagagcaatttcacacatgtttg 428  Q
    |||||||||||||| | ||| || |||||| ||||||||||||||  ||||| || ||||||| |||||||||  |||||||||    
T  13015636 gtgcttgtttggttcaacttctttttagtccagaagcacttctacagcctcagaattgaaaaa-agcaatttcttacatgtttg 13015718  T

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