View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_15 (Length: 448)
Name: NF11514_low_15
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 29 - 429
Target Start/End: Original strand, 27680010 - 27680410
Alignment:
| Q |
29 |
gagaagaatcctaagatgttttatgcaataatatactaaataatacaacgttttcttttggtttttgtccttgcttttgatcccttcccttctcttgcat |
128 |
Q |
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| T |
27680010 |
gagaagaatcctaagatgttttatgcaataatatactaaataatacaacgttttcttttggtttttgtccttgcttttgatcccttcccttctcttgcat |
27680109 |
T |
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| Q |
129 |
atcaagtatgcattgaaaataccaatataaacaaaggggagaaaacagcaataatttgaagaagnnnnnnngctaccagaatgggaccaaaattaaattc |
228 |
Q |
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| T |
27680110 |
atcaagtatgcattgaaaataccaatataaacaaaggggagaaaacagcaataatttgaagaagaaaaaaagctaccaaaatgggaccaaaattaaattc |
27680209 |
T |
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| Q |
229 |
cttgcatatgattattttcaacttaattgtttggaaaattaaacattaacttggtcaagtgaaaaaggatatgacctaaattatgcaagtaaatgagaga |
328 |
Q |
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| T |
27680210 |
cttgcatatgattattttcaacttaattgtttggaaaattaaacattaacttggtcaagtgaaaaaggatatgacctaaattatgcaagtaaatgagaga |
27680309 |
T |
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| Q |
329 |
acaatgatcccaactaacaatgctttatttccaaaataataggatgacagaagaaaatatgtctaaacaaagattgcctccaccaagtatgacaagattc |
428 |
Q |
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| T |
27680310 |
acaatgatcccaactaacaatgctttatttccaaaataataggatgacagaagaaaatatgtctaaacaaagattgcctccaccaagtatgacaagattc |
27680409 |
T |
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| Q |
429 |
t |
429 |
Q |
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| T |
27680410 |
t |
27680410 |
T |
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