View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_16 (Length: 439)
Name: NF11514_low_16
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_16 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 7698679 - 7699092
Alignment:
| Q |
18 |
aacacaatttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7698679 |
aacacaatttcaatctagtgattgatattggaggaccaactatatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtga |
7698778 |
T |
|
| Q |
118 |
ctccaaacattgccctaaatttagtggatgcaccggctgctctggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaaccca |
217 |
Q |
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|||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7698779 |
ctccaagctttgccctaaatttagtggatgcactggctgctctggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaaccca |
7698878 |
T |
|
| Q |
218 |
ttagtcaatgctatttttgtaggtgacactggcaatgatgttttgttcatatcacactctaaagtctctaacctactttctggatgcactgaatcagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7698879 |
ttagtcaatgctatttttgtaggtgacactggcaatgatgttttgttcatatcacactctaaagtctctaacctactttctggatgcactgaatcagaag |
7698978 |
T |
|
| Q |
318 |
tgtttacaggtgaagatgttcctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7698979 |
tgtttacaggtgaagatgttcctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttc |
7699078 |
T |
|
| Q |
418 |
atcatcttcttctc |
431 |
Q |
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|||||||||||||| |
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| T |
7699079 |
atcatcttcttctc |
7699092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 419
Target Start/End: Original strand, 7725610 - 7726006
Alignment:
| Q |
26 |
ttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtgactccaaac |
125 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||| ||||||| |
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| T |
7725610 |
ttcaattttgtgattgatattggaggaccaatcctatggtatgactgcaacaaaacctacaattcttcagcctacaatcccatctcttgtgaatccaaac |
7725709 |
T |
|
| Q |
126 |
attgccctaaatttagtggatgcaccggctgctctggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaacccattagtcaa |
225 |
Q |
| |
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||||| |||| | ||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| | |
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| T |
7725710 |
attgcactaatgatgctggatgcactagctgcaatggccctttcaaaccaggttgcacaaacaacacatgtggtgctaacataattaacccattagttga |
7725809 |
T |
|
| Q |
226 |
tgctatttttgtaggtgacactggcaatgatgttttgttcatatcacactctaaa------gtctctaacctactttctggatgcactgaatcagaagtg |
319 |
Q |
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|||||||||| |||||||||||||| |||| |||||||||| || | |||||| || || || | ||||||| |||||||| || | | |
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| T |
7725810 |
tgctattttttcaggtgacactggcagtgattctttgttcataccaaaatctaaaatccatatccctgactttatttctggttgcactgactcggctgca |
7725909 |
T |
|
| Q |
320 |
tttacaggtgaagatgttcctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttcat |
419 |
Q |
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||||| || ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
7725910 |
tttac---cgatgatttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactgtcattaccaaaacagctttcat |
7726006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 7710710 - 7710952
Alignment:
| Q |
26 |
ttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtgactccaaac |
125 |
Q |
| |
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|||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
7710710 |
ttcaattttgtgattgatattggaggaccaatcctatggtatgactgcaacaaagcctacaactcttcaacctacaatcccatctcttgtgaatccaaac |
7710809 |
T |
|
| Q |
126 |
attgccctaaatttagtggatgcaccggctgctctggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaacccattagtcaa |
225 |
Q |
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| T |
7710810 |
attgcactaatgatgctggatgcactagctgcaatggtcctttcaaaccaggttgctcaaacaatacatgtggtgcaaacataattaatccattagttga |
7710909 |
T |
|
| Q |
226 |
tgctatttttgtaggtgacactggcaatgatgttttgttcata |
268 |
Q |
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||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
7710910 |
tgcaattttttcaggtgacactggcagtgatgctttgttcata |
7710952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 7733020 - 7733262
Alignment:
| Q |
26 |
ttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtgactccaaac |
125 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
7733020 |
ttcaattttgtgattgatattggaggaccaatcctatggtatgactgcaacaaagcctacaactcttcaacctacaatcccatctcttgtgaatccaaac |
7733119 |
T |
|
| Q |
126 |
attgccctaaatttagtggatgcaccggctgctctggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaacccattagtcaa |
225 |
Q |
| |
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||||| |||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| | |
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| T |
7733120 |
attgcactaatgatgctggatgcactagctgcaatggtcctttcaaaccaggttgctcaaacaatacatgtggtgcaaacataattaatccattagttga |
7733219 |
T |
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| Q |
226 |
tgctatttttgtaggtgacactggcaatgatgttttgttcata |
268 |
Q |
| |
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||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
7733220 |
tgcaattttttcaggtgacactggcagtgatgctttgttcata |
7733262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 26 - 268
Target Start/End: Complemental strand, 7746885 - 7746643
Alignment:
| Q |
26 |
ttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtgactccaaac |
125 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||| |||||||||||| | ||||||| |
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| T |
7746885 |
ttcaatcttgtgattgatattggaggaccaatcttatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaac |
7746786 |
T |
|
| Q |
126 |
attgccctaaatttagtggatgcaccggctgctctggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaacccattagtcaa |
225 |
Q |
| |
|
||||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |
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|
| T |
7746785 |
tttgccctaatgatgctggatgcataagctgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttga |
7746686 |
T |
|
| Q |
226 |
tgctatttttgtaggtgacactggcaatgatgttttgttcata |
268 |
Q |
| |
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|||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
7746685 |
tgctattttttcaggtgacactggcagtgattttttgttcata |
7746643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 7746555 - 7746474
Alignment:
| Q |
338 |
cctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttcat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
7746555 |
cctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcat |
7746474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 7711037 - 7711118
Alignment:
| Q |
338 |
cctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttcat |
419 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
7711037 |
cctctcaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcat |
7711118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 7733347 - 7733428
Alignment:
| Q |
338 |
cctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttcat |
419 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
7733347 |
cctctcaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcat |
7733428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 11151 - 11195
Alignment:
| Q |
160 |
tggccctttcaaaccaggttgctcaaacaatacatgtgctgctaa |
204 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||| ||||||| |
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| T |
11151 |
tggccccttcaaaccaggttgcacaaacaatacatgtcctgctaa |
11195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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