View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11514_low_24 (Length: 369)

Name: NF11514_low_24
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11514_low_24
NF11514_low_24
[»] chr3 (16 HSPs)
chr3 (106-302)||(30221933-30222129)
chr3 (114-247)||(48648233-48648366)
chr3 (114-247)||(51827385-51827517)
chr3 (212-304)||(40933427-40933519)
chr3 (118-246)||(11651333-11651460)
chr3 (119-191)||(41458780-41458852)
chr3 (114-218)||(6974665-6974766)
chr3 (114-160)||(11652323-11652369)
chr3 (114-160)||(17603198-17603244)
chr3 (106-160)||(46149651-46149705)
chr3 (114-158)||(21727508-21727552)
chr3 (114-160)||(11654006-11654052)
chr3 (106-180)||(37987255-37987329)
chr3 (106-160)||(48649150-48649204)
chr3 (114-183)||(17605736-17605805)
chr3 (106-155)||(48765052-48765101)
[»] chr4 (19 HSPs)
chr4 (109-304)||(31328827-31329022)
chr4 (118-247)||(24157934-24158063)
chr4 (106-263)||(5590906-5591062)
chr4 (106-263)||(48127308-48127464)
chr4 (116-184)||(17447714-17447782)
chr4 (115-194)||(4380633-4380712)
chr4 (114-182)||(53772837-53772905)
chr4 (115-198)||(4379986-4380069)
chr4 (115-184)||(43145986-43146055)
chr4 (114-158)||(19550316-19550360)
chr4 (106-160)||(24158797-24158851)
chr4 (114-160)||(55000717-55000763)
chr4 (114-160)||(55976196-55976242)
chr4 (106-180)||(40496033-40496107)
chr4 (114-160)||(45920333-45920379)
chr4 (106-159)||(37273172-37273225)
chr4 (118-158)||(2181794-2181834)
chr4 (114-170)||(5590123-5590179)
chr4 (114-170)||(48128191-48128247)
[»] chr2 (8 HSPs)
chr2 (116-304)||(34812043-34812230)
chr2 (115-190)||(8541782-8541857)
chr2 (115-197)||(9540973-9541055)
chr2 (115-190)||(9540362-9540437)
chr2 (120-190)||(20632856-20632926)
chr2 (114-190)||(26588268-26588345)
chr2 (114-158)||(16692952-16692996)
chr2 (114-158)||(15902860-15902904)
[»] chr1 (12 HSPs)
chr1 (106-304)||(25671859-25672055)
chr1 (115-246)||(50271675-50271805)
chr1 (114-160)||(37577622-37577668)
chr1 (138-182)||(26118726-26118770)
chr1 (118-182)||(36689020-36689084)
chr1 (118-182)||(36705120-36705184)
chr1 (115-198)||(40022180-40022263)
chr1 (114-160)||(24992721-24992767)
chr1 (114-160)||(47967891-47967937)
chr1 (118-173)||(36688424-36688480)
chr1 (118-173)||(36704524-36704580)
chr1 (114-158)||(37853114-37853158)
[»] chr6 (6 HSPs)
chr6 (114-247)||(33435369-33435502)
chr6 (120-190)||(10926177-10926247)
chr6 (119-188)||(13255053-13255122)
chr6 (120-197)||(10927160-10927237)
chr6 (118-182)||(20833921-20833985)
chr6 (115-173)||(20833326-20833385)
[»] chr7 (7 HSPs)
chr7 (114-247)||(31954185-31954316)
chr7 (106-246)||(31955109-31955248)
chr7 (114-160)||(13785570-13785616)
chr7 (114-160)||(21493027-21493073)
chr7 (113-180)||(23901186-23901253)
chr7 (114-161)||(47718934-47718981)
chr7 (114-180)||(36379644-36379710)
[»] chr5 (16 HSPs)
chr5 (106-263)||(22799634-22799790)
chr5 (116-246)||(41045415-41045544)
chr5 (106-246)||(31082635-31082774)
chr5 (106-246)||(19366457-19366596)
chr5 (106-197)||(31036083-31036174)
chr5 (114-160)||(9407279-9407325)
chr5 (114-190)||(234730-234807)
chr5 (114-190)||(237766-237843)
chr5 (114-157)||(16538965-16539008)
chr5 (114-160)||(1283476-1283522)
chr5 (106-160)||(2313968-2314022)
chr5 (114-160)||(19359733-19359779)
chr5 (114-190)||(235423-235500)
chr5 (114-190)||(237072-237149)
chr5 (115-184)||(29088570-29088639)
chr5 (120-160)||(19129531-19129571)
[»] chr8 (7 HSPs)
chr8 (118-191)||(531421-531494)
chr8 (114-158)||(32414502-32414546)
chr8 (114-158)||(39860142-39860186)
chr8 (114-160)||(8373669-8373715)
chr8 (114-160)||(28929875-28929921)
chr8 (114-190)||(8372943-8373020)
chr8 (106-155)||(31641533-31641582)
[»] scaffold0418 (1 HSPs)
scaffold0418 (106-180)||(5927-6001)
[»] scaffold0096 (1 HSPs)
scaffold0096 (114-190)||(39925-40002)
[»] scaffold0085 (1 HSPs)
scaffold0085 (114-155)||(22052-22093)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 30222129 - 30221933
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30222129 tgtcaatagattcgttgataccaaattttaagcgttgatttcttttaatctgaaggcttatatttgttcatttaaaatatcatgtaaaccacctaagagt 30222030  T
Q  206 ataatgtagtatatctttttatgattttcattacctaatttggttcattgattttctccatccgtatttgcaatttcctaatttgtttcggccatta 302  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  30222029 ataatgtagtatatctttttatgattttcatttcctaatttgtttcattggttttctccatcagtatttgcaatttcctaatttgtttgggccatta 30221933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 48648233 - 48648366
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgta 213  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||| ||||| ||| |||||    
T  48648233 gattcgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccacttaagactatcatgta 48648332  T
Q  214 gtatatctttttatgattttcattacctaatttg 247  Q
    ||||||||||||  |||||||||| |||||||||    
T  48648333 gtatatctttttgcgattttcatttcctaatttg 48648366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 51827517 - 51827385
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgta 213  Q
    ||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||| ||||||||| |||||    
T  51827517 gattcgttgtcaccaaatcttaaccgttgatttctttttatctaaagacttatatttgttcatttagaatatcatatgaaccacttaagagtat-atgta 51827419  T
Q  214 gtatatctttttatgattttcattacctaatttg 247  Q
    ||||||||||||  |||||||||| |||||||||    
T  51827418 gtatatctttttgcgattttcatttcctaatttg 51827385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 40933519 - 40933427
Alignment:
Q  212 tagtatatctttttatgattttcattacctaatttggttcattgattttctccatccgtatttgcaatttcctaatttgtttcggccattacc 304  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  40933519 tagtatatcattttatgattttcatttcctaatttgtttcattggttttctccatcaatatttgcaatttcctaatttgtttcggccattacc 40933427  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 11651333 - 11651460
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgtagtat 217  Q
    |||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||| | ||||| |||| |||||| ||||||||| |||||| ||    
T  11651333 cgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccacgtaagagtat-atgtagaat 11651431  T
Q  218 atctttttatgattttcattacctaattt 246  Q
    ||||||||  |||||||||| ||||||||    
T  11651432 atctttttgcgattttcatttcctaattt 11651460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 41458852 - 41458780
Alignment:
Q  119 gttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgta 191  Q
    ||||||||||||| |||| |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  41458852 gttgacaccaaatcttaatcgttgatttcttttgatccaaaggcttatatttattcatttaaaatatcatgta 41458780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 6974766 - 6974665
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgta 213  Q
    |||||||||||||||||| |||| ||   ||||||||| ||| |||| ||||||||| ||||||||||||||||||| |||||| |||  |||| |||||    
T  6974766 gattcgttgacaccaaatcttaatcg---atttcttttgatccaaaggcttatatttattcatttaaaatatcatgttaaccacttaaacgtatcatgta 6974670  T
Q  214 gtata 218  Q
    |||||    
T  6974669 gtata 6974665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 11652323 - 11652369
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||    
T  11652323 gattcgttgacaccaaatcctaagcgttcatttcttttaatctaaag 11652369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 17603198 - 17603244
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  17603198 gattcgttgacaccaaatcttaaacgttcatttcttttaatctaaag 17603244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 46149651 - 46149705
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    ||||||| |||||||||||||||||| |||| ||||  |||||||||||||||||    
T  46149651 tgtcaatggattcgttgacaccaaatcttaaacgttcgtttcttttaatctaaag 46149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 21727552 - 21727508
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  21727552 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 21727508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 11654052 - 11654006
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  11654052 gattcgttgacaccaaatcttaaatgttcatttcttttaatctaaag 11654006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 37987255 - 37987329
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 180  Q
    ||||||| ||||||||||||||||||||||  |||||||||  ||| ||| |||| || |||||| |||| ||||    
T  37987255 tgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaaggctaatatttattcacttaa 37987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 48649204 - 48649150
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||| ||||||||||||||||||| |||| |||||||||| ||| ||| ||||    
T  48649204 tgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatccaaag 48649150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 17605736 - 17605805
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaat 183  Q
    |||||||||||||||||||| || |||  ||||| ||||||| ||||||| |||||| || | |||||||    
T  17605736 gattcgttgacaccaaatttcaaccgtctatttcatttaatcaaaagactcatatttatttacttaaaat 17605805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 48765101 - 48765052
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatc 155  Q
    ||||||| |||||||||||||||||| |||| ||||||||  ||||||||    
T  48765101 tgtcaatggattcgttgacaccaaatcttaaccgttgattgtttttaatc 48765052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 109 - 304
Target Start/End: Original strand, 31328827 - 31329022
Alignment:
Q  109 caatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtata 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  31328827 caatagattcgttgacaccaaattttaaacgttgatttcttttaatctgaaggcttatatttgttcatttaaaatatcatgtaaatcacctaagagtata 31328926  T
Q  209 atgtagtatatctttttatgattttcattacctaatttggttcattgattttctccatccgtatttgcaatttcctaatttgtttcggccattacc 304  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  31328927 atgtagtatatctttttatgattttcatttcctaatttgtttcattgattttctccattagtatttgcaatttcctaatttgtttcggccattacc 31329022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 24157934 - 24158063
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgtagtat 217  Q
    |||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||    
T  24157934 cgttgacaccaaatcttaaccgttgatttctttttatctaaaggcttatatttgttcatttagaatatcatgtgaaccacttaagagtatcatgtagtat 24158033  T
Q  218 atctttttatgattttcattacctaatttg 247  Q
    ||||||||  |||||||||| |||||||||    
T  24158034 atctttttgcgattttcatttcctaatttg 24158063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 5591062 - 5590906
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    |||||||  ||| ||||| | ||||||||||  ||||||||||||| |||||||  ||||||||| |||||| | ||||| |||| |||||| |||||||    
T  5591062 tgtcaatgaatttgttgatatcaaattttaactgttgatttcttttgatctaaatgcttatatttattcattaagaatataatgtgaaccacataagagt 5590963  T
Q  206 ataatgtagtatatctttttatgattttcattacctaatttggttcattgattttctc 263  Q
    || |||||| ||||||||||  |||||||||| ||||||||  ||| |||||||||||    
T  5590962 at-atgtagaatatctttttgcgattttcatttcctaatttatttcgttgattttctc 5590906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 48127308 - 48127464
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    |||||||  ||| ||||| | ||||||||||  ||||||||||||| |||||||  ||||||||| |||||| | ||||| |||| |||||| |||||||    
T  48127308 tgtcaatgaatttgttgatatcaaattttaactgttgatttcttttgatctaaatgcttatatttattcattaagaatataatgtgaaccacataagagt 48127407  T
Q  206 ataatgtagtatatctttttatgattttcattacctaatttggttcattgattttctc 263  Q
    || |||||| ||||||||||  |||||||||| ||||||||  ||| |||||||||||    
T  48127408 at-atgtagaatatctttttgcgattttcatttcctaatttatttcgttgattttctc 48127464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 17447714 - 17447782
Alignment:
Q  116 ttcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaata 184  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| |  ||||||||||||||||||||||    
T  17447714 ttcgttgacaccaaatattaaccgttgatctcttttaatctaagggtttatatttgttcatttaaaata 17447782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 4380712 - 4380633
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaac 194  Q
    ||||||||||||||||| |||| ||||||| |||||| |||||| | ||| ||||||||||||||||||  |||||||||    
T  4380712 attcgttgacaccaaatattaaccgttgatctcttttgatctaagggcttgtatttgttcatttaaaattgcatgtaaac 4380633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 53772837 - 53772905
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 182  Q
    |||||||||||||||||| |||| |||||||||||||| ||| |||| ||| | |||||||||||||||    
T  53772837 gattcgttgacaccaaatattaatcgttgatttcttttgatccaaaggcttttgtttgttcatttaaaa 53772905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 4379986 - 4380069
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacc 198  Q
    |||| |||||||||||| |||| ||||||| |||||| |||||| | ||| |||||||| |||||||||| ||||| |||||||    
T  4379986 attcattgacaccaaatgttaaccgttgatctcttttgatctaagggcttgtatttgtttatttaaaataccatgtgaaccacc 4380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 43145986 - 43146055
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaata 184  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||   ||||| |||||||||||||||||    
T  43145986 attcgttgacaccaaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaata 43146055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 19550316 - 19550360
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  19550316 gattcgttgacaccaaattttaagcgttcatttctcttaatctaa 19550360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 24158851 - 24158797
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||| ||||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  24158851 tgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatctaaag 24158797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 55000717 - 55000763
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  55000717 gattcgttgacaccaaatcttaaacgttcatttcttttaatctaaag 55000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 55976196 - 55976242
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  55976196 gattcgttgacaccaaatcttaaacgttcatttcttttaatctaaag 55976242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 40496107 - 40496033
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 180  Q
    ||||||| ||||||||||||||||||||||  |||||||||  ||| ||| |||| || |||||| |||| ||||    
T  40496107 tgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaagtctaatatttattcacttaa 40496033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 45920333 - 45920379
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    ||||| |||||| ||||| ||||||||| ||||||||||||||||||    
T  45920333 gattcattgacatcaaatcttaagcgttcatttcttttaatctaaag 45920379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 37273172 - 37273225
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaa 159  Q
    ||||||| ||| |||||||||||||| |||| |||| |||| ||||||||||||    
T  37273172 tgtcaatggatccgttgacaccaaatcttaaacgttcattttttttaatctaaa 37273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 2181794 - 2181834
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    |||||||||||||| ||||||||| |||||| |||||||||    
T  2181794 cgttgacaccaaatcttaagcgttcatttctcttaatctaa 2181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 5590123 - 5590179
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatattt 170  Q
    |||||||||||| |||||||||| |||||||||| ||| ||| |||| || ||||||    
T  5590123 gattcgttgacaacaaattttaatcgttgatttcatttgatccaaaggctaatattt 5590179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 48128247 - 48128191
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatattt 170  Q
    |||||||||||| |||||||||| |||||||||| ||| ||| |||| || ||||||    
T  48128247 gattcgttgacaacaaattttaatcgttgatttcatttgatccaaaggctaatattt 48128191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 116 - 304
Target Start/End: Original strand, 34812043 - 34812230
Alignment:
Q  116 ttcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgtagt 215  Q
    |||||||||||||||| |||||| ||||||||||||||||| |||  ||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  34812043 ttcgttgacaccaaatcttaagctttgatttcttttaatctgaaggtttatatttgttcatttaaa-tatcatgtgaaccacttaagagtataatgtagt 34812141  T
Q  216 atatctttttatgattttcattacctaatttggttcattgattttctccatccgtatttgcaatttcctaatttgtttcggccattacc 304  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  34812142 atatctttttatgattttcatttcctaatttgtttcattggttttctccatcagtatttgcgatttcctaatttgtttcggccattacc 34812230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 8541782 - 8541857
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 190  Q
    |||||||||||| |||| |||| |||||||||||||| ||| ||| |||||||||| |||||||||||||||||||    
T  8541782 attcgttgacacaaaatcttaatcgttgatttcttttgatccaaaaacttatatttattcatttaaaatatcatgt 8541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 9541055 - 9540973
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 197  Q
    ||||||||||||||||| |||  ||||||| |||||| |||  | | |||||||||||||||||| |||||||||| ||||||    
T  9541055 attcgttgacaccaaatcttagccgttgatatcttttgatccgatggcttatatttgttcatttagaatatcatgtgaaccac 9540973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 9540362 - 9540437
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 190  Q
    ||||||||||||||||| |||| | ||||||||| || |||| ||| |||||||||| ||||||| || |||||||    
T  9540362 attcgttgacaccaaatcttaaccattgatttctcttgatctgaaggcttatatttgctcatttagaaaatcatgt 9540437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 20632926 - 20632856
Alignment:
Q  120 ttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 190  Q
    |||||| ||||| || | |||||||||| ||| ||||||||  ||||||||||||| ||||||||||||||    
T  20632926 ttgacatcaaatattgaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaatatcatgt 20632856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 26588268 - 26588345
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  26588268 gattcgttgacaccaaatattaaccgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 26588345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 16692996 - 16692952
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  16692996 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 16692952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 15902904 - 15902860
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||    
T  15902904 gattcgttgacacaaaatcttaagcgttcatttctcttaatctaa 15902860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 25672055 - 25671859
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||| |||||| |||||||    
T  25672055 tgtcaatagattcgttgacactaaatcttaagcgttgatttcttttcatctgaaggcttatatttattcatttaaaatatcatgtgaaccacataagagt 25671956  T
Q  206 ataatgtagtatatctttttatgattttcattacctaatttggttcattgattttctccatccgtatttgcaatttcctaatttgtttcggccattacc 304  Q
    |  ||||| |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25671955 a--atgtactatacctttttatgattttcatttcctaatttgtttcattggttttctccatcagtatttgcaatttcctaatttgtttcggccattacc 25671859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 50271805 - 50271675
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgtag 214  Q
    ||||||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||| | ||||| |||| |||||| ||||||||| ||||||    
T  50271805 attcgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccacataagagtat-atgtag 50271707  T
Q  215 tatatctttttatgattttcattacctaattt 246  Q
     ||||| ||||   ||||||||| ||||||||    
T  50271706 aatatcattttgcaattttcatttcctaattt 50271675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 37577668 - 37577622
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  37577668 gattcgttgacaccaaattttagacgttgatttctttttatctaaag 37577622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 26118726 - 26118770
Alignment:
Q  138 cgttgatttcttttaatctaaagacttatatttgttcatttaaaa 182  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||    
T  26118726 cgttgatttcttttgatctaaaggcttttatttgttcatttaaaa 26118770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 36689084 - 36689020
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 182  Q
    ||||||||| |||| |||| |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  36689084 cgttgacacaaaatattaaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaa 36689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 36705184 - 36705120
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 182  Q
    ||||||||| |||| |||| |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  36705184 cgttgacacaaaatattaaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaa 36705120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 40022180 - 40022263
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacc 198  Q
    ||||||||||||| ||| |||  ||||||| |||||| ||||||   ||| ||||||||||||||||||| || || |||||||    
T  40022180 attcgttgacacctaatgttacccgttgatctcttttgatctaagagcttgtatttgttcatttaaaataccacgtgaaccacc 40022263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 24992767 - 24992721
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  24992767 gattcgttgacatcaaatcttaaacgttcatttcttttaatctaaag 24992721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 47967891 - 47967937
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| || |||||| |||||| |||||||||||    
T  47967891 gattcgttgacaccaaatcttgagcgttcatttctcttaatctaaag 47967937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 36688424 - 36688480
Alignment:
Q  118 cgttgacaccaaatt-ttaagcgttgatttcttttaatctaaagacttatatttgtt 173  Q
    ||||||||||||||| |||| |||||||||| ||| |||| ||| ||||||||||||    
T  36688424 cgttgacaccaaattattaaccgttgatttcgtttcatctgaaggcttatatttgtt 36688480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 36704524 - 36704580
Alignment:
Q  118 cgttgacaccaaatt-ttaagcgttgatttcttttaatctaaagacttatatttgtt 173  Q
    ||||||||||||||| |||| |||||||||| ||| |||| ||| ||||||||||||    
T  36704524 cgttgacaccaaattattaaccgttgatttcgtttcatctgaaggcttatatttgtt 36704580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 37853158 - 37853114
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    ||||||||||||||||||||||  | || ||||||||||||||||    
T  37853158 gattcgttgacaccaaattttagccatttatttcttttaatctaa 37853114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 33435369 - 33435502
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgta 213  Q
    |||||||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||||| |||||||||| |||||| ||||||||| |||||    
T  33435369 gattcgttgacaccaaatcttaactgttgatttctttttatctaaaggcttatatttattcatttagaatatcatgtgaaccacttaagagtattatgta 33435468  T
Q  214 gtatatctttttatgattttcattacctaatttg 247  Q
    ||||||||||||  |||||||||| |||||||||    
T  33435469 gtatatctttttgcgattttcatttcctaatttg 33435502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 10926177 - 10926247
Alignment:
Q  120 ttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgt 190  Q
    ||||||||||||| ||| ||||||||| |||| |||| |||||||||||||||||||||| ||||||||||    
T  10926177 ttgacaccaaattataaccgttgattttttttgatctgaagacttatatttgttcatttagaatatcatgt 10926247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 13255053 - 13255122
Alignment:
Q  119 gttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcat 188  Q
    |||||||| ||||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |||||    
T  13255053 gttgacactaaattttaaccgttgatttcttttgatctgaagacttatatttgctcatttaaaaaatcat 13255122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 10927237 - 10927160
Alignment:
Q  120 ttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 197  Q
    |||||||||||| ||||  ||||||||||||| |||  ||| || ||||||| ||||||||||| |||||| ||||||    
T  10927237 ttgacaccaaatcttaactgttgatttcttttgatccgaaggctaatatttgctcatttaaaatctcatgtgaaccac 10927160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 20833985 - 20833921
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa 182  Q
    |||||||||||||| || | |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  20833985 cgttgacaccaaatattgaccgttgatttcgtttgatctaaaggtttatatttgttcaattaaaa 20833921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 20833326 - 20833385
Alignment:
Q  115 attcgttgacaccaaatt-ttaagcgttgatttcttttaatctaaagacttatatttgtt 173  Q
    |||||||||||||||||| |||| |||||||||| ||| |||| ||| ||||||||||||    
T  20833326 attcgttgacaccaaattattaaccgttgatttcgtttgatctgaaggcttatatttgtt 20833385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 31954316 - 31954185
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgta 213  Q
    |||||||||||||||||| |||| |||||||||||||| || ||||| |||| ||||||| ||||| |||||||||| ||||||  |||||||| |||||    
T  31954316 gattcgttgacaccaaatcttaaccgttgatttctttttatttaaaggcttacatttgttgatttagaatatcatgtgaaccac--aagagtatcatgta 31954219  T
Q  214 gtatatctttttatgattttcattacctaatttg 247  Q
    ||||||||||||  |||||||||| |||||||||    
T  31954218 gtatatctttttgcgattttcatttcctaatttg 31954185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 31955248 - 31955109
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    ||||||| ||||||||||||  |||| ||||  ||||||||||||| |||||||  ||||||||| |||||| | ||||| |||| |||||| |||||||    
T  31955248 tgtcaattgattcgttgacattaaatcttaactgttgatttcttttgatctaaaagcttatatttattcattaagaatataatgtgaaccacataagagt 31955149  T
Q  206 ataatgtagtatatctttttatgattttcattacctaattt 246  Q
    || |||||| ||||||||||  |||||||||| ||||||||    
T  31955148 at-atgtagaatatctttttgcgattttcatttcctaattt 31955109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 13785616 - 13785570
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  13785616 gattcgttgacaccaaatcttaagcgttaatttctcttaatctaaag 13785570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 21493027 - 21493073
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  21493027 gattcgttgacaccaaatcttaagcgttaatttctcttaatctaaag 21493073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 23901186 - 23901253
Alignment:
Q  113 agattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 180  Q
    |||||||||||||||||||||||  |||||||||  ||| ||||||||  | ||||||||||| ||||    
T  23901186 agattcgttgacaccaaattttatccgttgattttatttgatctaaaggttaatatttgttcacttaa 23901253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 47718934 - 47718981
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaaga 161  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  47718934 gattcgttgacaccaaatcttaaatgttcatttcttttaatctaaaga 47718981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 36379710 - 36379644
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 180  Q
    ||||||||||||||||||||||  |||||||||  ||| ||||||||  | ||||||||||| ||||    
T  36379710 gattcgttgacaccaaattttatccgttgattttatttgatctaaaggttaatatttgttcacttaa 36379644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 22799790 - 22799634
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    |||||||  ||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||| |||||| | ||||| |||| |||||| |||||||    
T  22799790 tgtcaatgaattcgttgacaccaaatcttaactgttgatttcttttgatctaaagacttatatttattcattaagaatataatgtgaaccacataagagt 22799691  T
Q  206 ataatgtagtatatctttttatgattttcattacctaatttggttcattgattttctc 263  Q
    || |||||| ||||||||||  |||||||||| ||||||||  ||||| | |||||||    
T  22799690 at-atgtagaatatctttttgcgattttcatttcctaatttatttcatcggttttctc 22799634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 41045415 - 41045544
Alignment:
Q  116 ttcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagtataatgtagt 215  Q
    |||||||||||||||| ||||  ||||||||||||| |||||||| ||||||||| |||||| | ||||| |||| |||||| ||||||||| ||||||     
T  41045415 ttcgttgacaccaaatcttaactgttgatttcttttgatctaaaggcttatatttattcattaagaatataatgtgaaccacataagagtat-atgtaga 41045513  T
Q  216 atatctttttatgattttcattacctaattt 246  Q
    ||||||||||  |||||||||| ||||||||    
T  41045514 atatctttttgcgattttcatttcctaattt 41045544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 31082774 - 31082635
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    |||||||  ||||||||||||||||| ||||   |||||||||||| |||||| | ||||||||| |||||| | ||||| |||| |||||| |||||||    
T  31082774 tgtcaatgaattcgttgacaccaaatcttaactattgatttcttttgatctaagggcttatatttattcattaagaatataatgtgaaccacataagagt 31082675  T
Q  206 ataatgtagtatatctttttatgattttcattacctaattt 246  Q
     | |||||| ||||||||||  |||||||||| ||||||||    
T  31082674 gt-atgtagaatatctttttgcgattttcatttcctaattt 31082635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 19366596 - 19366457
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccacctaagagt 205  Q
    |||||||  |||||||||||  |||| ||||  | ||||||||||| |||||||| ||||| ||| |||||| | ||||| |||| |||||| |||||||    
T  19366596 tgtcaatgaattcgttgacattaaatcttaactgctgatttcttttgatctaaaggcttatgtttattcattaagaatataatgtgaaccacataagagt 19366497  T
Q  206 ataatgtagtatatctttttatgattttcattacctaattt 246  Q
    || |||||| ||||||||||  |||||||||| ||||||||    
T  19366496 at-atgtagaatatctttttgcgattttcatttcctaattt 19366457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 31036174 - 31036083
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgtaaaccac 197  Q
    ||||||| |||| ||| ||| ||||| |||| |||||||||||||| || ||||| |||||||||||| ||||| ||||| |||| ||||||    
T  31036174 tgtcaatcgatttgttaacatcaaatcttaatcgttgatttcttttgatataaaggcttatatttgttgatttagaatatgatgtgaaccac 31036083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 9407279 - 9407325
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  9407279 gattcgttgacaccaaatcttaagcgttcatttcttttaatctaaag 9407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 234730 - 234807
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  234730 gattcgttgacaccaaatattaaccgttgatttcgttttatctaatggtttacatttgttcaattaaaagtatcatgt 234807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 237843 - 237766
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  237843 gattcgttgacaccaaatattaaccgttgatttcgtttcatctaatggtttacatttgttcaattaaaagtatcatgt 237766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 16539008 - 16538965
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatcta 157  Q
    |||||||||||||||||| |||| |||| |||||||||||||||    
T  16539008 gattcgttgacaccaaatcttaaacgttcatttcttttaatcta 16538965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 1283522 - 1283476
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||||    
T  1283522 gattcgttgacaccaaatcttaaacgttcatttattttaatctaaag 1283476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 2313968 - 2314022
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||| |||||| |||||||||||| |||| |||| |||||| |||||||||||    
T  2313968 tgtcaacagattcattgacaccaaatcttaaacgttcatttctcttaatctaaag 2314022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 19359733 - 19359779
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  19359733 gattcgttgacaccaaatattaaccgttgatttcgtttgatctaaag 19359779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 235500 - 235423
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||| ||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  235500 gattcgttgacatcaaatattaaccgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 235423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 237072 - 237149
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||| ||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  237072 gattcgttgacatcaaatattaaccgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 237149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 29088639 - 29088570
Alignment:
Q  115 attcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaata 184  Q
    ||||||||||||  ||| |||| ||||||| |||||| ||||||   ||||| |||||||||||||||||    
T  29088639 attcgttgacacttaatgttaaccgttgatctcttttgatctaagagcttatgtttgttcatttaaaata 29088570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 19129571 - 19129531
Alignment:
Q  120 ttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||| ||||| ||| ||||||||||||||||||    
T  19129571 ttgacaccaaatcttaagtgttcatttcttttaatctaaag 19129531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 531494 - 531421
Alignment:
Q  118 cgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaatatcatgta 191  Q
    |||||||||||||| |||| ||| |||||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  531494 cgttgacaccaaatcttaatcgtggatttcttttgatccaaaggcttatatttattcatttaaaatatcatgta 531421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 32414546 - 32414502
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  32414546 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 32414502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 39860142 - 39860186
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaa 158  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||    
T  39860142 gattcgttgacaccaaatcttaagcgttcatttctcttaatctaa 39860186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 8373715 - 8373669
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  8373715 gattcgttgacaccaaatattaaccgttgatttcgtttgatctaaag 8373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 28929875 - 28929921
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaag 160  Q
    |||||||||||||||||| |||| | || ||||||||||||||||||    
T  28929875 gattcgttgacaccaaatcttaaactttcatttcttttaatctaaag 28929921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 8372943 - 8373020
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| | ||||||| |||||| ||||||||    
T  8372943 gattcgttgacaccaaatattaatcgttgatttcgtttgatctaatggtttacaattgttcaattaaaagtatcatgt 8373020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 31641533 - 31641582
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatc 155  Q
    ||||||| |||||||||||||||||| |||| ||||||||  ||||||||    
T  31641533 tgtcaatggattcgttgacaccaaatcttaaccgttgattgtttttaatc 31641582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 5927 - 6001
Alignment:
Q  106 tgtcaatagattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaa 180  Q
    ||||||| ||||||||||||||||||||||  |||||||||  ||| ||| ||||||| |||||| |||| ||||    
T  5927 tgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaagactaatatttattcacttaa 6001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 39925 - 40002
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatctaaagacttatatttgttcatttaaaa-tatcatgt 190  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||| |  ||| ||||||||| |||||| ||||||||    
T  39925 gattcgttgacaccaaatattaatcgttgatttcgtttgatctaatggtttacatttgttcaattaaaagtatcatgt 40002  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 22093 - 22052
Alignment:
Q  114 gattcgttgacaccaaattttaagcgttgatttcttttaatc 155  Q
    ||||||||||||||||||||||| ||||||||  ||||||||    
T  22093 gattcgttgacaccaaattttaaccgttgattgtttttaatc 22052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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