View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11514_low_26 (Length: 366)

Name: NF11514_low_26
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11514_low_26
NF11514_low_26
[»] chr3 (3 HSPs)
chr3 (12-366)||(51763499-51763853)
chr3 (14-46)||(513783-513815)
chr3 (249-295)||(514015-514061)
[»] chr4 (7 HSPs)
chr4 (96-294)||(21833491-21833689)
chr4 (249-306)||(53761156-53761213)
chr4 (249-294)||(1601177-1601222)
chr4 (249-298)||(371294-371343)
chr4 (14-58)||(1755463-1755507)
chr4 (12-52)||(53760916-53760956)
chr4 (330-366)||(53761234-53761270)
[»] chr6 (1 HSPs)
chr6 (104-287)||(6588474-6588657)
[»] chr1 (1 HSPs)
chr1 (84-293)||(19467618-19467827)
[»] chr7 (5 HSPs)
chr7 (104-228)||(10615429-10615553)
chr7 (188-293)||(10169335-10169440)
chr7 (188-293)||(10176860-10176965)
chr7 (330-366)||(10169507-10169543)
chr7 (330-366)||(10177032-10177068)
[»] chr8 (2 HSPs)
chr8 (185-296)||(18314910-18315021)
chr8 (185-239)||(18318916-18318970)
[»] chr5 (3 HSPs)
chr5 (118-209)||(28532569-28532660)
chr5 (253-296)||(32268231-32268274)
chr5 (250-296)||(41886933-41886979)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 51763499 - 51763853
Alignment:
Q  12 aatgtttccccttgcttgaagaactcgacctcagttaccccacatattgcaacaaaaattcctctagctttcgtgatgggatacaagcactttcacttgc 111  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763499 aatgtttcccattgctcgaagaactcgacctcagttaccccacatattgcaacaaaaattcctctagctttcgtgatgggatacaagcactttcacttgc 51763598  T
Q  112 tcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagcttctccaagatgtcatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763599 tcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagcttctccaagatgtcatc 51763698  T
Q  212 atgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtctttatccttttccaccactcctaacaatt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763699 atgtttgactgtgatcaaataaccaatgcaggagtcacttctgctctccgtgaaagaccaacattgacgtctttatccttttccaccactcctaacaatt 51763798  T
Q  312 cagtattcgataatatacattttattgattcgttggtgagtttgaagggtttgac 366  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51763799 cagtattcaataatatacattttattgattcgttggtgagtttgaagggtttgac 51763853  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 513783 - 513815
Alignment:
Q  14 tgtttccccttgcttgaagaactcgacctcagt 46  Q
    |||||||||||||||||||||||||||||||||    
T  513783 tgtttccccttgcttgaagaactcgacctcagt 513815  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 514015 - 514061
Alignment:
Q  249 cttctgccctccgtgaaagaccaacattgacgtctttatccttttcc 295  Q
    ||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  514015 cttctgctctccgtgagagaccaacattgacctctatatccttttcc 514061  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 294
Target Start/End: Original strand, 21833491 - 21833689
Alignment:
Q  96 aagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagct 195  Q
    |||| ||||||||||| ||| ||||||| || ||||||||| ||||||||| |||||||||||||||||| ||||||||| | |||   || ||||||||    
T  21833491 aagctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagct 21833590  T
Q  196 tctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtctttatccttttc 294  Q
    |||  |||| |||||||||||||| ||||||||||||| ||  | |||  |  |||| || |||||||| |||||||||||||  ||||||||||||||    
T  21833591 tcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcagctctccgtgagagaccaacattgagttctttatccttttc 21833689  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 53761156 - 53761213
Alignment:
Q  249 cttctgccctccgtgaaagaccaacattgacgtctttatccttttccaccactcctaa 306  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| ||  ||||||||    
T  53761156 cttctgctctccgtgaaagaccaacattgacgtctttctcctttttcattactcctaa 53761213  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 1601222 - 1601177
Alignment:
Q  249 cttctgccctccgtgaaagaccaacattgacgtctttatccttttc 294  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||    
T  1601222 cttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 371343 - 371294
Alignment:
Q  249 cttctgccctccgtgaaagaccaacattgacgtctttatccttttccacc 298  Q
    ||||||| |||| | | |||||||||||||| ||||||||||||||||||    
T  371343 cttctgctctccttcagagaccaacattgacctctttatccttttccacc 371294  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 1755507 - 1755463
Alignment:
Q  14 tgtttccccttgcttgaagaactcgacctcagttaccccacatat 58  Q
    |||||||| ||||||||||||||| ||||| || |||||||||||    
T  1755507 tgtttccctttgcttgaagaactcaacctcggtaaccccacatat 1755463  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 53760916 - 53760956
Alignment:
Q  12 aatgtttccccttgcttgaagaactcgacctcagttacccc 52  Q
    |||||||||| ||||  ||||||||||||||||||||||||    
T  53760916 aatgtttccctttgcgggaagaactcgacctcagttacccc 53760956  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 53761234 - 53761270
Alignment:
Q  330 attttattgattcgttggtgagtttgaagggtttgac 366  Q
    |||||||| | ||||||||||||||||||||||||||    
T  53761234 attttattaagtcgttggtgagtttgaagggtttgac 53761270  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 6588474 - 6588657
Alignment:
Q  104 tcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagcttctccaag 203  Q
    ||||| || ||||||||||| || ||||||||| |||||  || |||||| ||||||||||||||||||||| |  |   ||| |||||||||||||| |    
T  6588474 tcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaattgtaagcttctccagg 6588573  T
Q  204 atgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtctttat 287  Q
    | |||| ||| ||||  |||  | || |||||||||||||  |  ||||||| |||||||| ||||||| ||||||||||||||    
T  6588574 aagtcaacatatttggttgtcgtgaattaaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtctttat 6588657  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 19467618 - 19467827
Alignment:
Q  84 gtgatgggatacaagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatg 183  Q
    |||||||| || | || ||||||||||| ||| ||||||| || ||||||||| ||||||||| |||||| | | |  ||||| |||| ||| |  |       
T  19467618 gtgatggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaa 19467717  T
Q  184 caactgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtct 283  Q
    ||| |||||||||||  |||| || | |||||||   ||||||||||| || | ||| ||| |  |||||||  ||||||| ||||||||||||| ||||    
T  19467718 caattgtaagcttcttgaagaggttaccatgttttggtgtgatcaaatgactattgctggaattgcttctgctatccgtgagagaccaacattgaggtct 19467817  T
Q  284 ttatcctttt 293  Q
    ||||| ||||    
T  19467818 ttatcgtttt 19467827  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 10615553 - 10615429
Alignment:
Q  104 tcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagcttctccaag 203  Q
    |||||| | ||||| ||||| || ||||||||| ||||| | | || ||||||||||||||| ||| ||||| | ||   |||||||||||||||  |||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttcttgaag 10615454  T
Q  204 atgtcatcatgtttgactgtgatca 228  Q
    | |||||| |||||  |||||||||    
T  10615453 aggtcatcttgtttagctgtgatca 10615429  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 10169335 - 10169440
Alignment:
Q  188 tgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtctttat 287  Q
    |||||||||||  ||||||| | | ||||||| |||||||||||||| | ||| ||| |  |||||||  | ||||| ||||||||||||| ||| ||||    
T  10169335 tgtaagcttcttgaagatgttaccttgtttgagtgtgatcaaataactattgctggaattgcttctgctattcgtgagagaccaacattgaagtcattat 10169434  T
Q  288 cctttt 293  Q
    | ||||    
T  10169435 cgtttt 10169440  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 10176860 - 10176965
Alignment:
Q  188 tgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtctttat 287  Q
    |||||||||||  ||||||| | | ||||||| |||||||||||||| | ||| ||| |  |||||||  | ||||| ||||||||||||| ||| ||||    
T  10176860 tgtaagcttcttgaagatgttaccttgtttgagtgtgatcaaataactattgctggaattgcttctgctattcgtgagagaccaacattgaagtcattat 10176959  T
Q  288 cctttt 293  Q
    | ||||    
T  10176960 cgtttt 10176965  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 10169507 - 10169543
Alignment:
Q  330 attttattgattcgttggtgagtttgaagggtttgac 366  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  10169507 attttattgactcgctggtgagtttgaagggtttgac 10169543  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 10177032 - 10177068
Alignment:
Q  330 attttattgattcgttggtgagtttgaagggtttgac 366  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  10177032 attttattgactcgctggtgagtttgaagggtttgac 10177068  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 18314910 - 18315021
Alignment:
Q  185 aactgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgccctccgtgaaagaccaacattgacgtctt 284  Q
    ||||||||||||||| ||||    ||||| ||| ||||| ||||||||||||| || ||  |  ||| ||| |||||||| |||||||| |||| |||||    
T  18314910 aactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaactttgaggtctt 18315009  T
Q  285 tatccttttcca 296  Q
    ||||| ||||||    
T  18315010 tatccatttcca 18315021  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 18318916 - 18318970
Alignment:
Q  185 aactgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatg 239  Q
    ||||| ||||||||| |||| | ||||||  ||||||||||||||||||||||||    
T  18318916 aactggaagcttctcgaagaggccatcatacttgactgtgatcaaataaccaatg 18318970  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 28532660 - 28532569
Alignment:
Q  118 caaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagcttctccaagatgtca 209  Q
    |||||| || ||||||||| |||||  || |||||| ||||| ||||| ||||||||| |  |  |||||||||||||||||||||| ||||    
T  28532660 caaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 28532569  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 32268274 - 32268231
Alignment:
Q  253 tgccctccgtgaaagaccaacattgacgtctttatccttttcca 296  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||    
T  32268274 tgccctccgtgagagaccaacattgaggtctgtatccttttcca 32268231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 41886933 - 41886979
Alignment:
Q  250 ttctgccctccgtgaaagaccaacattgacgtctttatccttttcca 296  Q
    |||||| ||||| |||||||||||||||| |||||||||| ||||||    
T  41886933 ttctgctctccgggaaagaccaacattgaagtctttatccatttcca 41886979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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