View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11514_low_28 (Length: 344)
Name: NF11514_low_28
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 96 - 333
Target Start/End: Original strand, 35640592 - 35640829
Alignment:
| Q |
96 |
tgccacaaagttagagaagcaaaaacaagaatatataatcaaaaactctaacactagtaaaaatactaagaccaaacttagcnnnnnnnnctaaagaaga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35640592 |
tgccacaaagttagagaagcaaaaacaagaaaatataatcaaaaactctaacactagtaaaaatactaagaccaaacttagcaaaaaaaactaaagaaga |
35640691 |
T |
|
| Q |
196 |
caaacccaaggagatttttaatctgggaaaccaagaaatagcaagggttacgtgaaccacaaccatttgatataagggacggtgttgatatagaattgga |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35640692 |
caaacccaaggagatttttaatctgggaaaccaagaaatagcaagggttacgtgaaccacaaccatttgatataagggacggtgttgatatagaatttga |
35640791 |
T |
|
| Q |
296 |
ctccacctcaatgctcataaagtcataatcatttctct |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35640792 |
ctccacctcaatgctcataaagtcataatcatttctct |
35640829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 35640513 - 35640560
Alignment:
| Q |
18 |
aacatgtgtgttggatttaaattattttggaaataaaggggctatccc |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35640513 |
aacatgtgtgttggatttaaattattttggaaataaaggggctatccc |
35640560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University