View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_29 (Length: 342)
Name: NF11514_low_29
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 5529323 - 5529101
Alignment:
| Q |
18 |
aagaaattgtcaactccagtcccaannnnnnnnaaggacaaacccatgttttttaacaaatgtaacacaaacataaaatcataagatattattatttcca |
117 |
Q |
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| T |
5529323 |
aagaaattgtcaactccagtcccaattttttttaaggacagacccatgttttttaacaaatgaaacacaaacataaaatcataagatattattatttcca |
5529224 |
T |
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| Q |
118 |
ttcaccttaaactttttgtttctatgaactattgatttatttcctgatattgattattgtttatactccattattttaaatggaacttttatccctcctc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
5529223 |
ttcaccttaaactttttgtttctatgaactattgatttatttcatgatattgattatagtttatactccatcattttaaatggaacttttatcccacctc |
5529124 |
T |
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| Q |
218 |
acttatttgatagctaaaattaa |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
5529123 |
acttatttgatagctaaaattaa |
5529101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 231 - 338
Target Start/End: Complemental strand, 5528700 - 5528593
Alignment:
| Q |
231 |
ctaaaattaatgtgtaaaccacattgaggtggataatttataatcaagccaataatacaatgtcgtggtataaagttctttcgattcaatttattgttct |
330 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
5528700 |
ctaaaagtaatgtgtaaaccacattgagatggataatttataatcaagccaataatacaatgccgtggtataaagctctttcgactcaatttattgttct |
5528601 |
T |
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| Q |
331 |
tctctctc |
338 |
Q |
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||| |||| |
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| T |
5528600 |
tctttctc |
5528593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 6143658 - 6143605
Alignment:
| Q |
177 |
tttatactccattattttaaatggaa-cttttatccctcctcacttatttgata |
229 |
Q |
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||||||||||||||||||||||| || ||||||||| ||||||| |||||||| |
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| T |
6143658 |
tttatactccattattttaaatgaaatattttatcccgcctcactcatttgata |
6143605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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