View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_42 (Length: 253)
Name: NF11514_low_42
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 44039711 - 44039935
Alignment:
| Q |
11 |
cagagacacccattagcaaatctctttaagtattttttacttttaacattaataattcattgatattttagcaatcatagagtactcatagtgtacatac |
110 |
Q |
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| T |
44039711 |
cagaaacacacattagcaaaactctttaagtatattttacttttaacattaat--tccattgatattttagcaatcatagagtactcatagtgtacatac |
44039808 |
T |
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| Q |
111 |
aaaagccacgtgtagcataacagttaagtagaataaaatgatagaaaggtgcttcttcaatccctttcctcatggctatttatatcaaattctacatgaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44039809 |
aaaagccacgtgtagcataacagttaagtagaataaaatgatagaaaggtgcttcttcaatccctttcctcatggctatttatatcaaattctacatgaa |
44039908 |
T |
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| Q |
211 |
gtatatgatgaataggccactgagagt |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44039909 |
gtatatgatgaataggccactgagagt |
44039935 |
T |
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