View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11514_low_44 (Length: 251)
Name: NF11514_low_44
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_44 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 14959940 - 14959700
Alignment:
| Q |
5 |
agtagcataggtgaaataatggttactaaactaaaactagtaaatttcaaaaacaagaaaaatcattaataataaacaagaacggtgtagtacaaaagat |
104 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14959940 |
agtaccattggtgaaataatggttactaaacta------gtaaatttcaaaaacaagaaaaatcattaataataaacaagaacggtgaagtacaaaagat |
14959847 |
T |
|
| Q |
105 |
aggggaatacaacagaaattcaaacagatactttcgacgcatagttttgactcaaaagcaaaaggaataactgaaaataagaaagaaaatgcaacacata |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14959846 |
aggggaatacaacataaattcaaacagatactttcgacgcatagttttgactcaaaagcaaaaggaataactgaaaataagaaagaaaatgcaacacata |
14959747 |
T |
|
| Q |
205 |
aattgacctaaacaatgtgttcagttcacatgaaattcttagctatc |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
14959746 |
aattgacctaaacaaggtgttcagttcacatgaaattctcagctatc |
14959700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 2096022 - 2095866
Alignment:
| Q |
38 |
aaactagtaaatttcaaaaacaagaaaaatcattaataataaacaagaacggtgtagtacaaaagataggggaatacaacagaaattcaaacagatactt |
137 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||| |||||| || || ||| |||||||| ||||||||| ||||| |||| | | |||| |
|
|
| T |
2096022 |
aaactggtaaatttgaaaaacaagaaaattcattaataataaataagaacattgcagaacagaagataggagaatacaactgaaatccaaataaacactt |
2095923 |
T |
|
| Q |
138 |
tcgacgcatagttttgactcaaaagcaaaaggaataactgaaaataagaaagaaaat |
194 |
Q |
| |
|
| || | ||||||| |||||||| ||||| ||| |||||||||| |||||||||| |
|
|
| T |
2095922 |
gcaacacctagttttaactcaaaatcaaaataaattactgaaaataggaaagaaaat |
2095866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 2124013 - 2123857
Alignment:
| Q |
38 |
aaactagtaaatttcaaaaacaagaaaaatcattaataataaacaagaacggtgtagtacaaaagataggggaatacaacagaaattcaaacagatactt |
137 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||| || || ||| |||||||| ||||||||| ||||| |||| | | |||| |
|
|
| T |
2124013 |
aaactagtaaatttgaaaaacaagaaaattcattaataataaataagaacattgcagaacagaagataggagaatacaactgaaatccaaataaacactt |
2123914 |
T |
|
| Q |
138 |
tcgacgcatagttttgactcaaaagcaaaaggaataactgaaaataagaaagaaaat |
194 |
Q |
| |
|
| || | ||||||| |||||||| ||||| ||| |||||||||| ||||||||| |
|
|
| T |
2123913 |
gcaacacctagttttaactcaaaatcaaaataaattactgaaaatagaaaagaaaat |
2123857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University