View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_low_46 (Length: 249)
Name: NF11514_low_46
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 28181215 - 28181136
Alignment:
| Q |
22 |
gcatcggaaaaaatgaaaatattaaccacttactcttggaaaagagatcatgcattgaataactgagcaaggcagtggcc |
101 |
Q |
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| T |
28181215 |
gcatcggaaaaaatgaaaatattaactacttactcttggaaaagagatcatgcattgaataactgagcaaggcagcggcc |
28181136 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 28181120 - 28181084
Alignment:
| Q |
197 |
ataaaggaaatcatgttgaggttgccggtgaatggtt |
233 |
Q |
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| T |
28181120 |
ataaaggaaatcatgttgaggttgccggtgaatggtt |
28181084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 21425959 - 21426015
Alignment:
| Q |
172 |
gagcgtgtatcttccccaagaggtgataaaggaaatcatgttgaggttgccggtgaa |
228 |
Q |
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| T |
21425959 |
gagcgtgtatctgcctgaagaagtgataaaggaaatccttctgaggttgccggtgaa |
21426015 |
T |
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