View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11514_low_48 (Length: 244)

Name: NF11514_low_48
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11514_low_48
NF11514_low_48
[»] chr3 (7 HSPs)
chr3 (48-234)||(26104928-26105114)
chr3 (47-120)||(30171751-30171824)
chr3 (47-122)||(53559803-53559878)
chr3 (47-102)||(37780966-37781021)
chr3 (53-94)||(1455347-1455388)
chr3 (57-122)||(24064233-24064298)
chr3 (60-101)||(46188815-46188856)
[»] chr2 (8 HSPs)
chr2 (53-122)||(37284709-37284776)
chr2 (53-122)||(39562084-39562153)
chr2 (47-122)||(18078065-18078140)
chr2 (64-133)||(4917765-4917834)
chr2 (47-120)||(35179128-35179201)
chr2 (47-106)||(1002923-1002982)
chr2 (47-122)||(14779788-14779863)
chr2 (50-106)||(36447256-36447311)
[»] chr4 (3 HSPs)
chr4 (53-122)||(6129147-6129216)
chr4 (47-121)||(20714541-20714615)
chr4 (47-119)||(48652232-48652304)
[»] chr8 (6 HSPs)
chr8 (47-122)||(30906883-30906958)
chr8 (47-102)||(28326847-28326902)
chr8 (47-103)||(13881148-13881204)
chr8 (47-104)||(26629202-26629260)
chr8 (47-120)||(39151419-39151490)
chr8 (52-102)||(27564047-27564099)
[»] chr1 (9 HSPs)
chr1 (47-106)||(3657102-3657161)
chr1 (48-122)||(14351954-14352028)
chr1 (53-121)||(25929124-25929192)
chr1 (47-122)||(1838020-1838095)
chr1 (47-120)||(18396706-18396779)
chr1 (47-104)||(40261465-40261522)
chr1 (53-120)||(27143211-27143278)
chr1 (47-122)||(31061646-31061721)
chr1 (47-83)||(1749355-1749391)
[»] chr7 (9 HSPs)
chr7 (47-122)||(16360393-16360468)
chr7 (47-102)||(37983185-37983240)
chr7 (47-121)||(3498947-3499021)
chr7 (47-104)||(24456928-24456985)
chr7 (47-106)||(3091542-3091601)
chr7 (47-122)||(8379951-8380026)
chr7 (47-106)||(16662119-16662180)
chr7 (47-106)||(17636479-17636540)
chr7 (47-104)||(7743589-7743646)
[»] chr6 (6 HSPs)
chr6 (47-122)||(1814604-1814679)
chr6 (47-121)||(33845476-33845550)
chr6 (47-102)||(14287018-14287073)
chr6 (55-122)||(20398407-20398474)
chr6 (47-102)||(21277626-21277681)
chr6 (47-102)||(26860798-26860853)
[»] scaffold0056 (1 HSPs)
scaffold0056 (47-121)||(70834-70908)
[»] chr5 (4 HSPs)
chr5 (47-120)||(30403155-30403228)
chr5 (47-121)||(1056474-1056548)
chr5 (47-137)||(11319553-11319643)
chr5 (47-91)||(16054154-16054198)
[»] scaffold0939 (1 HSPs)
scaffold0939 (65-122)||(937-994)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 26105114 - 26104928
Alignment:
Q  48 tcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacgcatgaaatattattttatgttatca 147  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26105114 tcattaaaaataacaaaatttatttgatttattggtatgtgtaaattcctcaaaagcgataaatattatgaaacgcatgaagtattattttatgttatca 26105015  T
Q  148 tatggaacacatgtatagnnnnnnnnnnnnnnnntatcagcaatcgtcgggaataataaagctagcctaaagattttcagccctttg 234  Q
    ||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26105014 tatggaacacatgtatagaaaataaaagaaaaaatatcagcaatcgtcgggaataataaagctagcctaaagattttcagccctttg 26104928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 30171824 - 30171751
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaa 120  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||    
T  30171824 ttcatcaaaaacaacaaaatttatttgatttcttgatatgtataaattcctcaaaagcgacaagtattatgaaa 30171751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 53559803 - 53559878
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| ||||||||||| ||||||||| ||| ||||||||||||| ||| |||||||| | || |||| |||||||    
T  53559803 ttcatcaaaaataacaacatttatttgttttcttgatatgtgtaatttcttcaaaagcaacaagtattgtgaaacg 53559878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 37781021 - 37780966
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaa 102  Q
    ||||| |||||||| ||||||||||| |||| ||  ||||||||||||||||||||    
T  37781021 ttcatcaaaaataataaaatttatttaatttcttagtatgtgtaaattcctcaaaa 37780966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 1455347 - 1455388
Alignment:
Q  53 aaaaataacaaaatttatttgatttattgatatgtgtaaatt 94  Q
    ||||||||||||||||||||||||| ||  ||||||||||||    
T  1455347 aaaaataacaaaatttatttgatttcttagtatgtgtaaatt 1455388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 24064298 - 24064233
Alignment:
Q  57 ataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    |||||||||||||||| ||||||| |||| ||||| || ||||||| ||| || |||| |||||||    
T  24064298 ataacaaaatttatttaatttattaatatttgtaattttctcaaaaacgacaagtattgtgaaacg 24064233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 46188856 - 46188815
Alignment:
Q  60 acaaaatttatttgatttattgatatgtgtaaattcctcaaa 101  Q
    |||||||||||||||||| ||||| ||||||||||| |||||    
T  46188856 acaaaatttatttgatttcttgatgtgtgtaaattcatcaaa 46188815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 37284709 - 37284776
Alignment:
Q  53 aaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||    
T  37284709 aaaaataacaaaatttatttgatttattgata--tgtaaatttctcaaaagcgataagtattatgaaacg 37284776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 39562084 - 39562153
Alignment:
Q  53 aaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| || ||| ||||||||    
T  39562084 aaaaataacaaaatttatttgattttttgatatgtgtaatttccttaaaagcgacaagtatcatgaaacg 39562153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 18078140 - 18078065
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| ||||||||||||||||||||||||| ||| ||| ||||||||| | |||||||| ||||||| |||||||    
T  18078140 ttcatcaaaaataacaaaatttatttgattttttggtatttgtaaattctttaaaagcgacaaatattgtgaaacg 18078065  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 4917834 - 4917765
Alignment:
Q  64 aatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacgcatgaaatatt 133  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| ||||||| ||||||| ||||| ||||    
T  4917834 aatttatttgatttgttgatatatgtaaatttctcaaaagcgacaaatattgtgaaacggatgaagtatt 4917765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 35179128 - 35179201
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaa 120  Q
    ||||| |||||||||||||||||||| |||| ||| |||||||||||| || |||| | |||| |||| |||||    
T  35179128 ttcatcaaaaataacaaaatttatttcatttcttggtatgtgtaaatttctaaaaatccataagtattgtgaaa 35179201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 1002923 - 1002982
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcga 106  Q
    ||||| |||||||| |||||||||||||||| ||  |||||||||  |||||||||||||    
T  1002923 ttcatcaaaaataataaaatttatttgatttcttagtatgtgtaatatcctcaaaagcga 1002982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 14779863 - 14779788
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| |||||||| ||||||||||| ||||   ||||||||||| ||  |||||||||| ||||||| |||||||    
T  14779863 ttcatcaaaaataaaaaaatttatttaatttcacgatatgtgtaattttgtcaaaagcgacaaatattgtgaaacg 14779788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 36447311 - 36447256
Alignment:
Q  50 attaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcga 106  Q
    |||||||||| ||||||| ||||||||| ||  ||||||||| ||||||||||||||    
T  36447311 attaaaaatagcaaaatt-atttgatttcttagtatgtgtaatttcctcaaaagcga 36447256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 6129147 - 6129216
Alignment:
Q  53 aaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||| ||||||||||||    
T  6129147 aaaaataacaaaatttatttgatttcttgatatgtgtaatttcatcaaaggcgataagtattatgaaacg 6129216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 20714541 - 20714615
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaac 121  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| || |||| ||||||    
T  20714541 ttcatcaaaaataacaaaatttatttgatttattggtatgtgtaaatttctcaaaaacgacaagtattgtgaaac 20714615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 48652304 - 48652232
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaa 119  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||| || ||||||||||| || |||| ||||    
T  48652304 ttcatcaaaaataacaaaatttatttgatttcttggtatgtgtaattttctcaaaagcgacaagtattgtgaa 48652232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 30906883 - 30906958
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||  ||||||| || |||| |||||||    
T  30906883 ttcataaaaaataacaaaatttatttgatttcttgatatgtgtaaattcctgtaaagcgacaagtattgtgaaacg 30906958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 28326847 - 28326902
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaa 102  Q
    ||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  28326847 ttcatcaaaaataacaaaatttatttgatttcttggtatatgtaaattcctcaaaa 28326902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 13881148 - 13881204
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaag 103  Q
    ||||| ||||||||||||||||||||||||| ||  ||| | |||||||||||||||    
T  13881148 ttcatcaaaaataacaaaatttatttgatttttttgtatttataaattcctcaaaag 13881204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 26629202 - 26629260
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattga-tatgtgtaaattcctcaaaagc 104  Q
    ||||| ||| ||||||||||||||||||||| || | ||||||||| ||||||||||||    
T  26629202 ttcatcaaacataacaaaatttatttgatttttttattatgtgtaatttcctcaaaagc 26629260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 39151490 - 39151419
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaa 120  Q
    ||||| |||||||||||| |||||||||||| ||  ||| |||||||| || |||||||| || ||||||||||    
T  39151490 ttcatcaaaaataacaaagtttatttgatttttt--tatatgtaaatttcttaaaagcgacaagtattatgaaa 39151419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 27564047 - 27564099
Alignment:
Q  52 taaaaataacaaaatttatttgatttatt--gatatgtgtaaattcctcaaaa 102  Q
    |||||||||||||| ||||||||||| ||   |||||||||||||||||||||    
T  27564047 taaaaataacaaaaattatttgatttcttaatatatgtgtaaattcctcaaaa 27564099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 3657161 - 3657102
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcga 106  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  3657161 ttcattaaaaataacaaaatttatttgatttcttggtatgtataaattcctcaaaagcga 3657102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 14351954 - 14352028
Alignment:
Q  48 tcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    |||| ||||||||||||||||||||| ||| ||| |||| ||||||| ||||||||||| || ||||||||||||    
T  14351954 tcatcaaaaataacaaaatttatttgttttcttggtatgcgtaaatttctcaaaagcgacaagtattatgaaacg 14352028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 25929192 - 25929124
Alignment:
Q  53 aaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaac 121  Q
    |||| ||||||||||||||| |||| ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  25929192 aaaattaacaaaatttatttaattttttggtatgtgtaaattcttcaaaagcgataagtattgtgaaac 25929124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 1838020 - 1838095
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| ||||||||||||||||||||||||| || |||||||||| ||| | |||| ||||||||| | |||||||    
T  1838020 ttcatcaaaaataacaaaatttatttgatttcttaatatgtgtaatttcttaaaaaacgataaatagtgtgaaacg 1838095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 18396779 - 18396706
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaa 120  Q
    ||||| |||||||||||||||||||| |||| ||  |||||||||||| ||||||||||| || |||| |||||    
T  18396779 ttcataaaaaataacaaaatttatttaattttttagtatgtgtaaatttctcaaaagcgacaagtattgtgaaa 18396706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 40261465 - 40261522
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagc 104  Q
    ||||| |||| |||||||||||||||||||| ||| |||||||||||| |||||||||    
T  40261465 ttcatcaaaattaacaaaatttatttgatttcttggtatgtgtaaatttctcaaaagc 40261522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 27143211 - 27143278
Alignment:
Q  53 aaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaa 120  Q
    ||||||||||||||||||||||||| |||| || ||| ||||||| |||||| |||| |||| |||||    
T  27143211 aaaaataacaaaatttatttgatttcttgacatttgttaattccttaaaagctataagtattgtgaaa 27143278  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 31061646 - 31061721
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| |||||||||||  ||| ||| |||| ||  |||||||||||| ||||||||||| |||||||||||||||    
T  31061646 ttcataaaaaataacaatttttttttaatttttttgtatgtgtaaatttctcaaaagcgacaaatattatgaaacg 31061721  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 1749391 - 1749355
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgat 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  1749391 ttcatcaaaaataacaaaatttatttgatttcttgat 1749355  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 16360468 - 16360393
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| |||||||||||||||||||||||||  || ||||||||| |||||||||||| | || ||||||||||||    
T  16360468 ttcatcaaaaataacaaaatttatttgattttctggtatgtgtaatttcctcaaaagcaacaagtattatgaaacg 16360393  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 37983240 - 37983185
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaa 102  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  37983240 ttcatcaaaaataacaaaatttatttgatttcttgatatgtgtaatttcctcaaaa 37983185  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 3498947 - 3499021
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaac 121  Q
    ||||| ||||||||||||||| |||||| || ||| ||||||||||||||| ||||| || ||||| ||||||||    
T  3498947 ttcataaaaaataacaaaattaatttgaatttttggtatgtgtaaattccttaaaagtgacaaatactatgaaac 3499021  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 24456928 - 24456985
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagc 104  Q
    ||||| ||||||||||||||||||||||||| ||  ||||||||| ||||||||||||    
T  24456928 ttcataaaaaataacaaaatttatttgattttttagtatgtgtaatttcctcaaaagc 24456985  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 3091601 - 3091542
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcga 106  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||| | || |||||||||||    
T  3091601 ttcatcaaaaataacaaaatttatttgattttttggtatgtgtgatttactcaaaagcga 3091542  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 8380026 - 8379951
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    |||||||| |||||||||||||||||||||| ||  ||| ||||| |||||||||| ||| || |||| |||||||    
T  8380026 ttcattaacaataacaaaatttatttgatttcttagtatatgtaatttcctcaaaatcgacaagtattgtgaaacg 8379951  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 16662180 - 16662119
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattg--atatgtgtaaattcctcaaaagcga 106  Q
    ||||| |||||||||||||||||||| |||| |||  ||||||||||||| |||||||||||    
T  16662180 ttcatcaaaaataacaaaatttattttatttcttgatatatgtgtaaatttctcaaaagcga 16662119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 17636540 - 17636479
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattg--atatgtgtaaattcctcaaaagcga 106  Q
    ||||| |||||||||||||||||||| |||| |||  ||||||||||||| |||||||||||    
T  17636540 ttcatcaaaaataacaaaatttattttatttcttgatatatgtgtaaatttctcaaaagcga 17636479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 7743589 - 7743646
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagc 104  Q
    ||||| ||||||||||||||||||||||| | ||| ||||| || |||||||||||||    
T  7743589 ttcatcaaaaataacaaaatttatttgatatcttggtatgtctatattcctcaaaagc 7743646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 1814679 - 1814604
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||| || ||||||||||| || |||| |||||||    
T  1814679 ttcatcaaaaataacaaagtttatttgatttcttgatatgtgtaattttctcaaaagcgacaagtattgtgaaacg 1814604  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 33845476 - 33845550
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaac 121  Q
    ||||| ||||||||||||||||||||||||  ||||| ||||||| || ||||||| |||||| |||| ||||||    
T  33845476 ttcatcaaaaataacaaaatttatttgattctttgatgtgtgtaattttctcaaaaacgataagtattttgaaac 33845550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 14287073 - 14287018
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaa 102  Q
    ||||| |||||||||||||||||||||||||||||  |||||||| || |||||||    
T  14287073 ttcataaaaaataacaaaatttatttgatttattggcatgtgtaattttctcaaaa 14287018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 20398407 - 20398474
Alignment:
Q  55 aaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||||||||||||||||||||| || ||||| |||| ||  |||||||||| || ||||||||||||    
T  20398407 aaataacaaaatttatttgatttcttaatatgcgtaattttttcaaaagcgacaagtattatgaaacg 20398474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 21277626 - 21277681
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaa 102  Q
    ||||| ||||||||||||||||||||||||| || |||| |  |||||||||||||    
T  21277626 ttcataaaaaataacaaaatttatttgatttcttaatatattaaaattcctcaaaa 21277681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 26860853 - 26860798
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaa 102  Q
    ||||| |||||||| |||| ||||||||||| ||||| ||||||| ||||||||||    
T  26860853 ttcatcaaaaataaaaaaagttatttgatttcttgatgtgtgtaatttcctcaaaa 26860798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 70908 - 70834
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaac 121  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| || |||| |||  | |||||||||||    
T  70908 ttcatcaaaaataacaaaatttatttgatttcttgatatgtgtaaatttctgaaaaacgacgagtattatgaaac 70834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 30403155 - 30403228
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaa 120  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||||| |||||||| ||||| |||| |||||    
T  30403155 ttcatcaaaaataacaaaatttatttggtttcttggtatgtgtaaatttctcaaaagagataagtattgtgaaa 30403228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 1056474 - 1056548
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaac 121  Q
    |||||||||||||||||||||||||  |||| ||  ||||||||| || |||||||| ||||| |||| ||||||    
T  1056474 ttcattaaaaataacaaaatttattcaatttcttagtatgtgtaattttctcaaaagtgataagtattgtgaaac 1056548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 11319643 - 11319553
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacgcatgaaatattattt 137  Q
    ||||| |||||| |||| |||||||||||| |||  ||||||||| ||| ||||||  || ||||||| ||||||| | ||| ||||||||    
T  11319643 ttcataaaaaattacaacatttatttgattcattagtatgtgtaatttcttcaaaatggacaaatattgtgaaacggaggaagtattattt 11319553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 16054198 - 16054154
Alignment:
Q  47 ttcattaaaaataacaaaatttatttgatttattgatatgtgtaa 91  Q
    ||||| |||||||||||||||||||| |||| || ||||||||||    
T  16054198 ttcataaaaaataacaaaatttatttcatttcttaatatgtgtaa 16054154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 994 - 937
Alignment:
Q  65 atttatttgatttattgatatgtgtaaattcctcaaaagcgataaatattatgaaacg 122  Q
    ||||||||||||| || |||||||| | |||||||||||||||||||||| |||||||    
T  994 atttatttgatttcttaatatgtgttatttcctcaaaagcgataaatattgtgaaacg 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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