View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11514_low_49 (Length: 242)

Name: NF11514_low_49
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11514_low_49
NF11514_low_49
[»] chr5 (4 HSPs)
chr5 (14-203)||(6824143-6824332)
chr5 (55-176)||(18181799-18181919)
chr5 (55-222)||(8462021-8462188)
chr5 (71-125)||(33737333-33737387)
[»] chr7 (4 HSPs)
chr7 (56-222)||(43380508-43380675)
chr7 (55-126)||(18310909-18310980)
chr7 (55-219)||(34218497-34218662)
chr7 (53-97)||(37345501-37345545)
[»] chr8 (1 HSPs)
chr8 (54-219)||(35809823-35809989)
[»] chr6 (1 HSPs)
chr6 (53-190)||(28020041-28020178)
[»] chr2 (5 HSPs)
chr2 (53-219)||(36401170-36401337)
chr2 (54-187)||(6406945-6407078)
chr2 (53-184)||(5327389-5327518)
chr2 (55-218)||(31467581-31467740)
chr2 (55-115)||(5325125-5325185)
[»] chr4 (6 HSPs)
chr4 (55-190)||(47577995-47578130)
chr4 (53-155)||(4643408-4643509)
chr4 (55-93)||(23770206-23770244)
chr4 (55-102)||(9032159-9032206)
chr4 (55-126)||(22851597-22851668)
chr4 (52-119)||(42627718-42627785)
[»] chr1 (2 HSPs)
chr1 (53-125)||(12689437-12689509)
chr1 (57-214)||(3771561-3771712)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 6824143 - 6824332
Alignment:
Q  14 atgaaaatgggttgctaattactttagcgatagaaaattagaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6824143 atgaaaatgggttgctaattactttagcgatagaaaattagaaatagtgactgaaaattcagtcgctaaggtaaaaatcgatctttaattcgtttagcga 6824242  T
Q  114 cagaaatagtgaccgcataattcaaccgttaaagtataaactttaaaaatcaatcgttatttcgattgctacttattaaccacacttgat 203  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  6824243 cagaaatagtgaccgcataattcaatcactaaagtataaactttaaaaattaatcgttatttcggttgctacttattaaccacacttgat 6824332  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 18181799 - 18181919
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaac 154  Q
    ||||||||| |||||||||| |||||||||||||||||||||| |||||||   ||||||| ||||||||| || | |||| || || |||||||||||     
T  18181799 aaatagtgattgaaaattcattcgctaaggtaaaaatcggtctctaattcg-caagcgacaaaaatagtgatcg-aaaatttaatcgctaaagtataaaa 18181896  T
Q  155 t-ttaaaaatcaatcgttatttc 176  Q
    | ||||||||  |||||||||||    
T  18181897 tattaaaaatggatcgttatttc 18181919  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 8462188 - 8462021
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaac 154  Q
    ||||||||| || |||||||| |  ||| |||||| || |||| || |  |||||| |||||||||||||||  || ||||||| |  |||||||||||     
T  8462188 aaatagtgattgcaaattcagccattaaagtaaaattcagtctctattaagtttagtgacagaaatagtgac--caaaattcaatcactaaagtataaaa 8462091  T
Q  155 t-ttaaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattcctagatccatc 222  Q
    | ||||||||| ||| |||||||  |||||||||| ||| |||||||||| |||||||  ||||||||||    
T  8462090 tattaaaaatcgatcattatttcagttgctacttatttacccacacttgaaatgtatttatagatccatc 8462021  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 33737333 - 33737387
Alignment:
Q  71 ttcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtga 125  Q
    |||||||||||| |||||||| ||||| || | ||||||||||||||||||||||    
T  33737333 ttcagtcgctaaagtaaaaataggtctctagtacgtttagcgacagaaatagtga 33737387  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 43380675 - 43380508
Alignment:
Q  56 aatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaact 155  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||| | |||||||||||| | |||| |  || ||||||||||| |    
T  43380675 aatagtgactaaaaattcagtcgctaaggtaaaaatgggtctataattcttttagcgataaaaatagtgaccg-aaaatttagtcgctaaagtataaaat 43380577  T
Q  156 -ttaaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattcctagatccatc 222  Q
     ||||| ||| ||| |||||||  |||||||||| |||  || |||||| |||||||||||||||||||    
T  43380576 attaaagatcgatcattatttcagttgctacttatttagtcatacttgaaatgtattcctagatccatc 43380508  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 18310909 - 18310980
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgac 126  Q
    ||||||||||||||||||  |||| ||| |||||||||||||| |||||| ||| |||||||||||| ||||    
T  18310909 aaatagtgactgaaaatttggtcgttaatgtaaaaatcggtctctaattcatttcgcgacagaaataatgac 18310980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 34218662 - 34218497
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaac 154  Q
    ||||||||||||||||||||||| |||  ||||||||   ||| | || |||||| ||||| ||||||||| || | ||||||| || |||||||||||     
T  34218662 aaatagtgactgaaaattcagtcactatagtaaaaataaatctctcatacgtttaacgacataaatagtgatcg-aaaattcaatcgctaaagtataaaa 34218564  T
Q  155 t-ttaaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattcctagatcc 219  Q
    | ||||||||   |||| | ||| ||||||||||| |||||||||||| | ||||||| ||| ||||    
T  34218563 tattaaaaattgttcgtcaattcaattgctacttatttaaccacacttaaaatgtatttctaaatcc 34218497  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 37345501 - 37345545
Alignment:
Q  53 agaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtct 97  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||    
T  37345501 agaaatagtgattgaaaattcagtcgcaaaagtaaaaatcggtct 37345545  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 219
Target Start/End: Complemental strand, 35809989 - 35809823
Alignment:
Q  54 gaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaa 153  Q
    ||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||| |||||||||  | | ||||||   |||||||||||||    
T  35809989 gaaatagtgactgaaaattcagtcgatgaggtaaaaattggtctctaatttgtttaacgacataaatagtgatag-aaaattcagttgttaaagtataaa 35809891  T
Q  154 ct-ttaaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattcctagatcc 219  Q
     | ||||||||| |||||||||| |||| ||| ||| ||| |||||||||| ||| ||||||||||||    
T  35809890 atattaaaaatcgatcgttattttgatttctatttatttagccacacttgaaatgcattcctagatcc 35809823  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 28020178 - 28020041
Alignment:
Q  53 agaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataa 152  Q
    |||||||||||||||||||||||||  |||||||| || |||||| ||||| ||||| ||||| |||||||||||| | ||||||| | |||||||||||    
T  28020178 agaaatagtgactgaaaattcagtccgtaaggtaataaccggtctctaatttgtttaacgacataaatagtgaccg-aaaattcaatcattaaagtataa 28020080  T
Q  153 act-ttaaaaatcaatcgttatttcgattgctacttatt 190  Q
    | | ||||||||| |||||||| ||  ||||||||||||    
T  28020079 aatattaaaaatcgatcgttatatcagttgctacttatt 28020041  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 36401337 - 36401170
Alignment:
Q  53 agaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataa 152  Q
    ||||||||||| |||||||||||||| ||| ||||||||| ||||   || |||||| |||||||||||||||||| | ||||||| |  ||||||||||    
T  36401337 agaaatagtgattgaaaattcagtcgttaaagtaaaaatcagtctccgatacgtttaccgacagaaatagtgaccg-aaaattcaatcactaaagtataa 36401239  T
Q  153 act-ttaaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattcctagatcc 219  Q
    | | ||||||||||||| || ||||  || ||||||| ||| |||||||||| |||||||| |||||||    
T  36401238 aatattaaaaatcaatcattgtttcagttcctacttatttagccacacttgaaatgtattcttagatcc 36401170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 6407078 - 6406945
Alignment:
Q  54 gaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaa 153  Q
    |||| |||||||||||||||||| ||||| || ||||||||||| |||| | |||||||||| |||||||| ||| | ||||||  ||||||||||||||    
T  6407078 gaaacagtgactgaaaattcagttgctaaagtgaaaatcggtctctaatacttttagcgacaaaaatagtgcccg-aaaattcagtcgttaaagtataaa 6406980  T
Q  154 ct-ttaaaaatcaatcgttatttcgattgctactt 187  Q
     | ||||||||| ||| |||||| | |||||||||    
T  6406979 atattaaaaatctatcattattttggttgctactt 6406945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 5327389 - 5327518
Alignment:
Q  53 agaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataa 152  Q
    |||||||| |||  |||||||| || ||| ||||||||||||||| ||||| |||||  |||  ||||||| |||| | ||||||| | |||||||||||    
T  5327389 agaaatagggacaaaaaattcaatctctatggtaaaaatcggtctctaatttgtttactgac--aaatagtaaccg-aaaattcaatcattaaagtataa 5327485  T
Q  153 act-ttaaaaatcaatcgttatttcgattgcta 184  Q
    | | |||||||||||||||||||| | ||||||    
T  5327486 attattaaaaatcaatcgttattttggttgcta 5327518  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 31467581 - 31467740
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaac 154  Q
    |||||||||||||||||||| |||| ||||||||||        ||||| ||||| ||||||||| |||||| | | ||||||  || |||||||||||     
T  31467581 aaatagtgactgaaaattcaatcgcaaaggtaaaaaag------taattggtttaacgacagaaaaagtgacagaa-aattcagtcgctaaagtataaaa 31467673  T
Q  155 ttt--aaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattcctagatc 218  Q
    | |  ||||||||||||||| |||| | |||||||| ||| |||||||||| ||||||| |||||||    
T  31467674 tattaaaaaatcaatcgttaattcggtcgctacttatttagccacacttgaaatgtatttctagatc 31467740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 5325125 - 5325185
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgaca 115  Q
    |||||| ||| |||||||||||| ||||||||| ||||||||| ||| | ||||| |||||    
T  5325125 aaatagggacagaaaattcagtctctaaggtaacaatcggtctctaaattgtttaccgaca 5325185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 47578130 - 47577995
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaac 154  Q
    |||||||||| |||||||||| |||||| ||||||||  |||| || | |||||||||||| |||||| ||||| | ||||||| || |||||||||||     
T  47578130 aaatagtgaccgaaaattcagccgctaaagtaaaaatatgtctctagtacgtttagcgacaaaaatagcgaccg-aaaattcaatcgctaaagtataaaa 47578032  T
Q  155 t-ttaaaaatcaatcgttatttcgattgctacttatt 190  Q
    | ||||||||| |||||||||| | ||| ||||||||    
T  47578031 tattaaaaatccatcgttattttggttgttacttatt 47577995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 4643408 - 4643509
Alignment:
Q  53 agaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataa 152  Q
    ||||||||| ||| |||||||||||||||| ||| ||||| ||||  |||||||||||||||| ||||||| |||| | || |||  |||||||||||||    
T  4643408 agaaatagtaactaaaaattcagtcgctaaagtacaaatcagtctccaattcgtttagcgacataaatagttaccg-aaaactcagtcgttaaagtataa 4643506  T
Q  153 act 155  Q
    |||    
T  4643507 act 4643509  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 23770244 - 23770206
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcg 93  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  23770244 aaatagtgactgaaaattcagccgctaaggtaaaaatcg 23770206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 9032206 - 9032159
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaat 102  Q
    ||||||||| |||||||||||||| ||| ||||||||| |||||||||    
T  9032206 aaatagtgattgaaaattcagtcgttaaagtaaaaatcagtctttaat 9032159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 22851597 - 22851668
Alignment:
Q  55 aaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgac 126  Q
    ||||| |||||||||||||||||  ||| |||||||| | ||| ||||  ||||||||||||| ||||||||    
T  22851597 aaataatgactgaaaattcagtcattaaagtaaaaattgatctctaatatgtttagcgacagagatagtgac 22851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 42627718 - 42627785
Alignment:
Q  52 tagaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaa 119  Q
    |||| ||| |||||||||||||| ||| ||   |||||||||||||||| |||||||||||| |||||    
T  42627718 tagagataatgactgaaaattcaatcgttagtataaaaatcggtctttatttcgtttagcgatagaaa 42627785  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 12689509 - 12689437
Alignment:
Q  53 agaaatagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtga 125  Q
    ||||||| |||||||| ||||||||||||| |||||||| ||| |||||  | ||||||||||||||||||||    
T  12689509 agaaataatgactgaacattcagtcgctaaagtaaaaattggtttttaacacatttagcgacagaaatagtga 12689437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 3771712 - 3771561
Alignment:
Q  57 atagtgactgaaaattcagtcgctaaggtaaaaatcggtctttaattcgtttagcgacagaaatagtgaccgcataattcaaccgttaaagtataaactt 156  Q
    |||| ||||| ||||||||||||||| |||||||||||||| ||||   | || ||||| |||||||||   |||| |     | | |||||||||| |     
T  3771712 atagggactggaaattcagtcgctaaagtaaaaatcggtctctaataaatataacgacataaatagtga--tcatagt-----catcaaagtataaaata 3771620  T
Q  157 taaaaatcaatcgttatttcgattgctactta-ttaaccacacttgatatgtattccta 214  Q
    | |||||||||| |||||| |||||||||||| ||| |||||| ||| |||||||||||    
T  3771619 ttaaaatcaatcattattttgattgctacttatttagccacacctgaaatgtattccta 3771561  T

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