View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11514_low_6 (Length: 538)
Name: NF11514_low_6
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 53597183 - 53597693
Alignment:
| Q |
11 |
caaaggcaatttaataactattcacaaatctcaaccatacacatttgctcaatttataccaacatacaatatactcatattgctagtttaaaaggactaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53597183 |
caaatgcaatttaataactattcacaagtcacaaccatacacattcgctcaatttataccaacatacaatatactcatattgctagtttaaaaggactaa |
53597282 |
T |
|
| Q |
111 |
agaactgaattcacactaccatatataaccaatatacatacttatatgattaattaaattaatatggtcgttctccaacataattaccaacaggatcata |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53597283 |
ataactgaattcacactaccatatataaccaatatacatacttatatgattaattaaattaatatggtcgttctccaacataattaccaacaggatcata |
53597382 |
T |
|
| Q |
211 |
gttacaagtcatgaacacatctccatcatcacacacaactcttgcacaaccaattcttctagtacttttccacacaatctgagtataatgtccacacatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53597383 |
gttacaagtcatgaacacatctccatcatcacacacaactcttgcacaaccaattcttctagtacttttccacacaatctgagtataatgtccacacatt |
53597482 |
T |
|
| Q |
311 |
tgaccagatacacatgaattagtcacatatgtgtaatatttctcttcatcagcccaagcttttacagcatccgttggtgtccaatcagagccactacccc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53597483 |
tgaccagatacacatgaattagtcacatatgtgtaatatttctcttcatcagcccaagcttttacagcatccgttggtgtccaatcagagccactacccc |
53597582 |
T |
|
| Q |
411 |
aatatatattctctcctaatttgaaaccatcttcaggaaaagaatgttccactttgcaatctggttttctttgactagcccaccaccttgcatattgttc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53597583 |
aatatatattctctcctaatttgaaaccatcttcaggaaaagaatgttccactttgcaatctggttttctttgactagcccaccaccttgcatattgttc |
53597682 |
T |
|
| Q |
511 |
aagctggtaat |
521 |
Q |
| |
|
||||||||||| |
|
|
| T |
53597683 |
aagctggtaat |
53597693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University