View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11514_low_9 (Length: 477)
Name: NF11514_low_9
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_low_9 |
 | |
|
| [»] scaffold0891 (2 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 4016 - 4477
Alignment:
| Q |
7 |
gatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggggatcatcatacaataatttccaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4016 |
gatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggg-atcatcatacaataatttccaga |
4114 |
T |
|
| Q |
107 |
agtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgttgagatgcaacatttctgttctat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4115 |
agtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgttgagatgcaacatttctgttctat |
4214 |
T |
|
| Q |
207 |
tacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaatattttatggagaaaaaacacttaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4215 |
tacttttagctaaactatttccacttcatatttatggttttattattttaagttcttatgattgactatatgcaatattttatggggaaaaaacacttaa |
4314 |
T |
|
| Q |
307 |
ttaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaacatatatttctaaaattatcttc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4315 |
ttaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaacatatatttctaaaattatcttc |
4414 |
T |
|
| Q |
407 |
caacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4415 |
caacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtt |
4477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 3635 - 3687
Alignment:
| Q |
15 |
gagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
66 |
Q |
| |
|
||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
3635 |
gagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 35774464 - 35774173
Alignment:
| Q |
7 |
gatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgaggggatcatcatacaataat |
99 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
35774464 |
gatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggtggatcatcatacaataat |
35774365 |
T |
|
| Q |
100 |
ttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattttgttgagatg------ca |
191 |
Q |
| |
|
||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||||||||||||| | |
|
|
| T |
35774364 |
ttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattttgttgagatgcgacatcg |
35774265 |
T |
|
| Q |
192 |
acatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaatatttt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| |||||||| ||| |||||| |||||||||| |
|
|
| T |
35774264 |
acatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgttagttcttaatattaactataagcaatatttt |
35774173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 35848245 - 35848122
Alignment:
| Q |
7 |
gatggaaggagaaaaggaagaagaattgagacaaa-gtgcttggagtggaagaagaaagctaga------actaatttgaggggatcatcatacaataat |
99 |
Q |
| |
|
||||||||||||||| | | ||||| ||||||||| | | |||| ||||||||||||||||| | ||||||||| | |||||||||||||||||| |
|
|
| T |
35848245 |
gatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggaggatcatcatacaataat |
35848146 |
T |
|
| Q |
100 |
ttccagaagtttatcaaagaggtt |
123 |
Q |
| |
|
||||| ||||| |||||||||||| |
|
|
| T |
35848145 |
ttccataagttaatcaaagaggtt |
35848122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 18 - 141
Alignment:
| Q |
7 |
gatggaaggagaaaaggaagaagaattgagacaaa-gtgcttggagtggaagaagaaagctaga------actaatttgaggggatcatcatacaataat |
99 |
Q |
| |
|
||||||||||||||| | | ||||| ||||||||| | | |||| ||||||||||||||||| | ||||||||| | |||||||||||||||||| |
|
|
| T |
18 |
gatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggaggatcatcatacaataat |
117 |
T |
|
| Q |
100 |
ttccagaagtttatcaaagaggtt |
123 |
Q |
| |
|
||||| ||||| |||||||||||| |
|
|
| T |
118 |
ttccataagttaatcaaagaggtt |
141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 490 - 551
Alignment:
| Q |
7 |
gatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
67 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
490 |
gatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 490 - 551
Alignment:
| Q |
7 |
gatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
67 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
490 |
gatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University