View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_high_13 (Length: 390)

Name: NF11515_high_13
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_high_13
NF11515_high_13
[»] chr3 (36 HSPs)
chr3 (2-249)||(19868636-19868894)
chr3 (82-249)||(25491857-25492014)
chr3 (2-243)||(4250045-4250297)
chr3 (6-105)||(9157797-9157896)
chr3 (2-105)||(42354618-42354721)
chr3 (8-105)||(9154624-9154721)
chr3 (2-105)||(44508617-44508720)
chr3 (1-110)||(30158237-30158346)
chr3 (1-105)||(10963216-10963320)
chr3 (1-105)||(10966725-10966829)
chr3 (2-105)||(18883022-18883125)
chr3 (2-105)||(27054679-27054782)
chr3 (1-100)||(29233792-29233890)
chr3 (1-100)||(5887188-5887286)
chr3 (1-110)||(2783925-2784034)
chr3 (3-100)||(16314796-16314892)
chr3 (3-100)||(18495790-18495886)
chr3 (1-100)||(2279824-2279923)
chr3 (1-100)||(5897172-5897270)
chr3 (1-100)||(10959714-10959813)
chr3 (1-100)||(16414960-16415058)
chr3 (1-100)||(18515934-18516032)
chr3 (281-373)||(19868511-19868605)
chr3 (1-100)||(23374934-23375032)
chr3 (2-105)||(28327252-28327355)
chr3 (2-105)||(28330577-28330680)
chr3 (9-105)||(6173565-6173661)
chr3 (2-105)||(20536784-20536886)
chr3 (281-331)||(11270629-11270679)
chr3 (2-105)||(3305658-3305761)
chr3 (281-331)||(25491776-25491826)
chr3 (114-211)||(3305540-3305635)
chr3 (114-211)||(28327134-28327229)
chr3 (114-211)||(28330459-28330554)
chr3 (2-71)||(54736337-54736406)
chr3 (103-137)||(20536898-20536932)
[»] chr5 (20 HSPs)
chr5 (2-249)||(1810615-1810873)
chr5 (2-214)||(33920829-33921053)
chr5 (2-105)||(17944459-17944562)
chr5 (2-105)||(2500215-2500318)
chr5 (2-105)||(19685978-19686081)
chr5 (2-105)||(34652962-34653065)
chr5 (9-110)||(4732045-4732146)
chr5 (5-105)||(3194967-3195067)
chr5 (2-105)||(19689361-19689464)
chr5 (2-211)||(9690453-9690674)
chr5 (2-100)||(26337796-26337894)
chr5 (2-105)||(33321131-33321234)
chr5 (1-110)||(26547897-26548006)
chr5 (1-110)||(26551456-26551565)
chr5 (1-110)||(28562565-28562674)
chr5 (1-110)||(28566133-28566242)
chr5 (1-110)||(40800122-40800231)
chr5 (1-100)||(26726760-26726858)
chr5 (22-100)||(25185200-25185278)
chr5 (60-104)||(2453142-2453186)
[»] scaffold0043 (1 HSPs)
scaffold0043 (6-243)||(13251-13499)
[»] scaffold0214 (3 HSPs)
scaffold0214 (2-105)||(19864-19967)
scaffold0214 (20-105)||(27431-27516)
scaffold0214 (22-105)||(13415-13498)
[»] chr4 (19 HSPs)
chr4 (2-105)||(11702794-11702897)
chr4 (2-243)||(56089521-56089773)
chr4 (2-105)||(10247629-10247732)
chr4 (1-100)||(3719702-3719801)
chr4 (2-105)||(15850981-15851084)
chr4 (22-104)||(10385760-10385842)
chr4 (1-110)||(18859582-18859691)
chr4 (1-97)||(3734131-3734226)
chr4 (2-105)||(13978942-13979045)
chr4 (1-100)||(14701719-14701818)
chr4 (17-243)||(19928563-19928800)
chr4 (1-100)||(49640022-49640120)
chr4 (1-97)||(49636729-49636824)
chr4 (2-105)||(33400539-33400642)
chr4 (23-110)||(17670221-17670308)
chr4 (2-105)||(26703698-26703801)
chr4 (114-211)||(13978824-13978919)
chr4 (2-105)||(23653089-23653195)
chr4 (103-135)||(11560578-11560610)
[»] scaffold0401 (1 HSPs)
scaffold0401 (2-243)||(3918-4170)
[»] chr6 (21 HSPs)
chr6 (2-211)||(12746496-12746717)
chr6 (2-105)||(34502151-34502254)
chr6 (2-243)||(35027340-35027592)
chr6 (1-110)||(14969471-14969580)
chr6 (2-105)||(31262579-31262682)
chr6 (3-105)||(33679396-33679498)
chr6 (2-105)||(9313992-9314095)
chr6 (1-100)||(13095904-13096003)
chr6 (2-105)||(28894688-28894791)
chr6 (2-105)||(5618516-5618618)
chr6 (1-100)||(22920343-22920441)
chr6 (2-101)||(28117652-28117751)
chr6 (6-105)||(2330438-2330537)
chr6 (1-100)||(11410578-11410677)
chr6 (2-105)||(17696397-17696500)
chr6 (2-105)||(2331090-2331193)
chr6 (1-100)||(17231669-17231768)
chr6 (48-110)||(3827069-3827131)
chr6 (10-69)||(15579130-15579189)
chr6 (283-338)||(20527901-20527956)
chr6 (2-38)||(5618421-5618457)
[»] chr2 (17 HSPs)
chr2 (2-104)||(1503640-1503742)
chr2 (2-104)||(1506844-1506946)
chr2 (1-110)||(13518108-13518217)
chr2 (1-109)||(18011755-18011863)
chr2 (2-105)||(30719583-30719686)
chr2 (2-105)||(38326478-38326581)
chr2 (1-110)||(11059603-11059712)
chr2 (2-105)||(4577661-4577763)
chr2 (1-100)||(22592328-22592427)
chr2 (17-105)||(38326178-38326266)
chr2 (9-100)||(15704184-15704275)
chr2 (1-100)||(18938709-18938807)
chr2 (2-105)||(38316254-38316357)
chr2 (1-100)||(29435564-29435663)
chr2 (2-105)||(40677979-40678082)
chr2 (114-211)||(40678105-40678200)
chr2 (47-100)||(15719476-15719529)
[»] chr8 (21 HSPs)
chr8 (1-110)||(14187805-14187914)
chr8 (1-110)||(27863760-27863869)
chr8 (2-105)||(9466936-9467039)
chr8 (2-105)||(30645282-30645385)
chr8 (1-110)||(5964060-5964169)
chr8 (1-100)||(20262369-20262468)
chr8 (1-100)||(21048999-21049098)
chr8 (2-105)||(39660164-39660267)
chr8 (9-110)||(22654066-22654167)
chr8 (1-100)||(24434846-24434944)
chr8 (1-100)||(24903690-24903789)
chr8 (2-211)||(5827717-5827938)
chr8 (2-100)||(13331902-13332000)
chr8 (2-100)||(31981162-31981260)
chr8 (1-100)||(17013238-17013337)
chr8 (1-100)||(17543864-17543963)
chr8 (1-100)||(24444892-24444990)
chr8 (2-104)||(31984799-31984901)
chr8 (117-205)||(14627143-14627229)
chr8 (281-318)||(44007779-44007816)
chr8 (47-100)||(18696177-18696231)
[»] scaffold0134 (1 HSPs)
scaffold0134 (2-105)||(7046-7149)
[»] chr7 (26 HSPs)
chr7 (1-110)||(20100447-20100556)
chr7 (1-110)||(22257061-22257170)
chr7 (1-108)||(748247-748354)
chr7 (2-105)||(22083650-22083752)
chr7 (2-100)||(26152964-26153062)
chr7 (2-243)||(3541375-3541625)
chr7 (1-110)||(22232833-22232942)
chr7 (1-110)||(22253797-22253906)
chr7 (1-100)||(23598969-23599067)
chr7 (1-100)||(26460280-26460378)
chr7 (9-110)||(8397648-8397749)
chr7 (22-110)||(2349276-2349364)
chr7 (1-100)||(710223-710322)
chr7 (1-100)||(2251685-2251783)
chr7 (2-105)||(6964095-6964198)
chr7 (1-100)||(26182116-26182214)
chr7 (2-105)||(38431201-38431304)
chr7 (2-105)||(43549001-43549104)
chr7 (2-105)||(44017999-44018102)
chr7 (1-110)||(5826914-5827023)
chr7 (17-103)||(23467353-23467440)
chr7 (2-100)||(12803472-12803569)
chr7 (1-100)||(11825561-11825660)
chr7 (281-358)||(9765226-9765304)
chr7 (114-211)||(44018125-44018220)
chr7 (161-211)||(17601382-17601432)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-100)||(27085-27184)
[»] scaffold0083 (2 HSPs)
scaffold0083 (2-243)||(28981-29233)
scaffold0083 (2-243)||(52778-53030)
[»] chr1 (19 HSPs)
chr1 (1-110)||(37641671-37641780)
chr1 (1-100)||(24200450-24200548)
chr1 (2-105)||(33898134-33898237)
chr1 (2-105)||(3087932-3088035)
chr1 (1-100)||(16839139-16839237)
chr1 (1-100)||(16849069-16849167)
chr1 (1-100)||(17902993-17903092)
chr1 (1-100)||(20981173-20981272)
chr1 (1-100)||(28918188-28918287)
chr1 (2-105)||(18392201-18392304)
chr1 (1-100)||(20964270-20964369)
chr1 (2-105)||(34552891-34552994)
chr1 (1-100)||(49716184-49716283)
chr1 (2-105)||(23441491-23441594)
chr1 (17-100)||(49719667-49719750)
chr1 (2-105)||(6195626-6195729)
chr1 (114-211)||(23441617-23441712)
chr1 (114-211)||(33898016-33898111)
chr1 (2-65)||(50197167-50197230)
[»] scaffold0911 (2 HSPs)
scaffold0911 (2-105)||(4371-4474)
scaffold0911 (114-211)||(4255-4350)
[»] scaffold0175 (1 HSPs)
scaffold0175 (1-100)||(28866-28965)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-100)||(27176-27274)
[»] scaffold0062 (2 HSPs)
scaffold0062 (9-100)||(53096-53187)
scaffold0062 (47-100)||(68033-68086)
[»] scaffold1048 (1 HSPs)
scaffold1048 (1-100)||(1216-1314)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-104)||(227157-227259)
[»] scaffold0637 (1 HSPs)
scaffold0637 (2-82)||(2022-2102)
[»] scaffold0273 (1 HSPs)
scaffold0273 (114-243)||(20018-20144)
[»] scaffold0360 (1 HSPs)
scaffold0360 (1-64)||(2298-2361)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 19868894 - 19868636
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| |||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  19868894 aaacataattactatttcaggattaaaagctagggttaatagtcattcaattcctaagatcaatttatgtaattggaagaagctagggttaatagtcatg 19868795  T
Q  102 caaagcaatga---------------acacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttca 186  Q
    ||||||||| |               |||||||||||  ||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||||    
T  19868794 caaagcaatcatatgaaaagcaacaaacacaaataattctgaataaagactaggattccattgaattaag---gagagtttaaacaaattacatggttca 19868698  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcatgttcat 249  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  19868697 tagatcacaatagattcatctcatgactc-gattaatctaggagcttagctactcatgttcat 19868636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 25492014 - 25491857
Alignment:
Q  82 agttagggttaatagtcatgcaaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatg 181  Q
    |||||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||| |||||||||| |   ||||||||||||||||||||    
T  25492014 agttagggttaatagtcat------caatgaacacaaataattttgaataaagactaggattccgttgaattaaata---gagttcaaacaaattacatg 25491924  T
Q  182 gttcatagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcatgttcat 249  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  25491923 gttcatagatcacaatagattcatctcatggctc-gattaatctaagagcttagctactcatgttcat 25491857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 4250297 - 4250045
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  4250297 aaacagaattactatttcaagattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttaatagtcatg 4250198  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              |||||||||||||||||||||  ||||||||||||||| || ||||||  |   ||||||||| |  ||||||||||||||||||    
T  4250197 caaacaatcatacgaaaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagtacttaacaaattacatggttca 4250100  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
     ||||||||| ||||||||||||||||| | || |||||||||| ||| ||||||||    
T  4250099 cagatcacaa-agattcatctcatgact-taatcaatctaagagtttagctactcat 4250045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 9157896 - 9157797
Alignment:
Q  6 agaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||||||||| ||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  9157896 agaattactatttcatgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttagggttactagtcatgcaaa 9157797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 42354618 - 42354721
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  42354618 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 42354717  T
Q  102 caaa 105  Q
    ||||    
T  42354718 caaa 42354721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 9154721 - 9154624
Alignment:
Q  8 aattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||||||| ||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  9154721 aattactatttcatgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttaggattactagtcatgcaaa 9154624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 44508720 - 44508617
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||||| |||||| ||||  ||||||||  ||||||||||||||| ||||||||||| |||||||||||||||||    
T  44508720 aaacagaattactatttcaggattaaaagctcgggttagtagtcattcaattcttaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 44508621  T
Q  102 caaa 105  Q
    ||||    
T  44508620 caaa 44508617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30158237 - 30158346
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||||  || ||||||| ||||||||||| |||| ||||||||||||||||    
T  30158237 caaacaggattactatttcaggattaaaagctagggttaatagtcattcaattcataatatcaattcatgtaattgcacgaagctagggttaatagtcat 30158336  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  30158337 acaaagcaat 30158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10963320 - 10963216
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  10963320 caaacaggattactatttcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 10963221  T
Q  101 gcaaa 105  Q
     ||||    
T  10963220 acaaa 10963216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10966829 - 10966725
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  10966829 caaacaggattactatttcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 10966730  T
Q  101 gcaaa 105  Q
     ||||    
T  10966729 acaaa 10966725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 18883125 - 18883022
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  || ||| || ||||||||||||||| |||| |||||| |||||||||||||||||    
T  18883125 aaacagaattactatttcaggattaaaagctagggttagtagtcatttaatccctaagatcaatttatgtgattgtaagaagctagggttaatagtcatg 18883026  T
Q  102 caaa 105  Q
    ||||    
T  18883025 caaa 18883022  T

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Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 27054782 - 27054679
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  || |||||| ||||||||||||||| |||| ||||||||||||||| |||||||     
T  27054782 aaacagaattactatttcaggattaaaagctagggttagtagtcatttaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcata 27054683  T
Q  102 caaa 105  Q
    ||||    
T  27054682 caaa 27054679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29233792 - 29233890
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  29233792 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 29233890  T

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Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5887188 - 5887286
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  5887188 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 5887286  T

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Target: chr3; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2784034 - 2783925
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||||||  ||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||| ||||| |||| ||||||||||||||||    
T  2784034 caaacaggattactatatcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtagttgcacgaagctagggttaatagtcat 2783935  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  2783934 acaaagcaat 2783925  T

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Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 16314796 - 16314892
Alignment:
Q  3 aacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||| |||||||| ||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  16314796 aacagaattactaattcaggattaaaatctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 16314892  T

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Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 18495790 - 18495886
Alignment:
Q  3 aacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||| |||||||| ||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  18495790 aacagaattactaattcaggattaaaatctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 18495886  T

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Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2279824 - 2279923
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||| ||||||||||||| ||||||||| |||||||| ||||  ||||||||| || ||||||| |||||||| ||||||| || |||||||||||||    
T  2279824 caaacaaaattactaattcaggattaaaagttagggttagtagtcattcaattcctaatatcaattcatgtaatttcaagaagctaaggttaatagtcat 2279923  T

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Target: chr3; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5897172 - 5897270
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || |||||  |||||| ||||||||||||||||    
T  5897172 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-taagaagctagggttaatagtcat 5897270  T

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Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10959813 - 10959714
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| ||||  ||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||| ||||||||    
T  10959813 caaacaggattactatttcagaattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttgatagtcat 10959714  T

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Target: chr3; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16414960 - 16415058
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  || |||||  || ||||||| || ||||| ||||||| ||||||||||||||||    
T  16414960 caaacagaattactaattcaagattaaaagctagggttaatagtcatttaattcataatatcaattcatataatt-caagaagctagggttaatagtcat 16415058  T

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Target: chr3; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18515934 - 18516032
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  || |||||  || ||||||| || ||||| ||||||| ||||||||||||||||    
T  18515934 caaacagaattactaattcaagattaaaagctagggttaatagtcatttaattcataatatcaattcatataatt-caagaagctagggttaatagtcat 18516032  T

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Target: chr3; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 19868605 - 19868511
Alignment:
Q  281 ccgagagtttcgtagttgccgatgttgctcctgaatttct--ttctgattggtgttgttgtgtgcataccatagctgctcccgttgtgcgtgatg 373  Q
    ||||||||||| |||||||||| ||||||| |||||||||  ||| ||||| ||||||||||||||| || |||||||| |||||||||||||||    
T  19868605 ccgagagtttcatagttgccgacgttgctcttgaatttctctttccgattgatgttgttgtgtgcatgccgtagctgctaccgttgtgcgtgatg 19868511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23374934 - 23375032
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  23374934 caaacagaattactaattcaggattaaaagatagggttaaaagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 23375032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 28327355 - 28327252
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| |  |||||||||||| |||| |||||| |||||||| |||||||     
T  28327355 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctagcatcaatttatgtgattgaaagaagctagggttagtagtcata 28327256  T
Q  102 caaa 105  Q
    ||||    
T  28327255 caaa 28327252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 28330680 - 28330577
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| |  |||||||||||| |||| |||||| |||||||| |||||||     
T  28330680 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctagcatcaatttatgtgattgaaagaagctagggttagtagtcata 28330581  T
Q  102 caaa 105  Q
    ||||    
T  28330580 caaa 28330577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6173565 - 6173661
Alignment:
Q  9 attactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||||||||||| |||||||| ||||||||| | ||  ||||||||| || ||||||| |||||||| ||||||| |||||||||||||||| ||||    
T  6173565 attactaattcaggattaaaatctagggttagtggtcattcaattcctaatatcaattcatgtaatttcaagaagctagggttaatagtcatacaaa 6173661  T

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Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 20536784 - 20536886
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||| |||||||||||||   | |||||| |||||||||| || | |||| |||||||||||||||||||||||     
T  20536784 aaacagaattactatttcaggattaaaagatagggttaatagtcaattaattcctaagatcaattaatatgattg-aagaagttagggttaatagtcata 20536882  T
Q  102 caaa 105  Q
    ||||    
T  20536883 caaa 20536886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 11270679 - 11270629
Alignment:
Q  281 ccgagagtttcgtagttgccgatgttgctcctgaatttctttctgattggt 331  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11270679 ccgagagtttcgtagttgccgatcttgctcctgaatttctttctgattggt 11270629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 3305761 - 3305658
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||  ||||||| | |  |||||||||||| |||| |||||| |||||||| |||||||     
T  3305761 aaacagaattactatttcattattaaaagttagggttagtagtcattcaatttctattatcaatttatgtgattgaaagaagctagggttagtagtcata 3305662  T
Q  102 caaa 105  Q
    ||||    
T  3305661 caaa 3305658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 25491826 - 25491776
Alignment:
Q  281 ccgagagtttcgtagttgccgatgttgctcctgaatttctttctgattggt 331  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  25491826 ccgagagtttcgtagttgcggacgttgctcctgaatttctttccgattggt 25491776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 3305635 - 3305540
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  3305635 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 3305540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 28327229 - 28327134
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  28327229 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 28327134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 28330554 - 28330459
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  28330554 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 28330459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 54736337 - 54736406
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgt 71  Q
    |||||||||||||| |||| |||||||||||||| ||| |||   ||||||||  |||||||||||||||    
T  54736337 aaacagaattactatttcaggattaaaagctaggattagtagcgattcaattcttaagatcaatttatgt 54736406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 20536898 - 20536932
Alignment:
Q  103 aaagcaatgaacacaaataatcttgaataaagact 137  Q
    ||||||||||||||||||||| |||||||||||||    
T  20536898 aaagcaatgaacacaaataattttgaataaagact 20536932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 1810615 - 1810873
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||| | |||| ||||||||| |||||||||||||  ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||    
T  1810615 aaacagaattacaatttcaggattaaaagttagggttaatagtcattcaatttctaagatcaatttatgtaattgtaagaagttagggttaatagtcatg 1810714  T
Q  102 caaagcaat---------------gaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttca 186  Q
    |||| ||||               |||||||||||||  | |||||||||||||| ||||||||||||||   |||| |||||||||||| |||| ||||    
T  1810715 caaaacaatcatatgaaaaacaatgaacacaaataattctcaataaagactaggaatccattgaattaaa---gagacttcaaacaaatttcatgattca 1810811  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcatgttcat 249  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  1810812 tagatcataatagattcatctcatgactc-gattaatctaggagcttaactactcatattcat 1810873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 33921053 - 33920829
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  33921053 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttaatagtcatg 33920954  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              |||||||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||||||||||||    
T  33920953 caaacaatcatacgaaaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttca 33920856  T
Q  187 tagatcacaatagattcatctcatgact 214  Q
     ||||||||| |||||||||||||||||    
T  33920855 cagatcacaa-agattcatctcatgact 33920829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 17944562 - 17944459
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  17944562 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 17944463  T
Q  102 caaa 105  Q
    ||||    
T  17944462 caaa 17944459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 2500215 - 2500318
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||||||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||     
T  2500215 aaacagaattactatttcaggattaaaagctagggttaatagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcata 2500314  T
Q  102 caaa 105  Q
    ||||    
T  2500315 caaa 2500318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 19686081 - 19685978
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  19686081 aaacagaattactatttcaggattaaaagctagggttattagtcattcaattcctaagatcaatttatgtgattgtaagaagctagggttaatagtcatg 19685982  T
Q  102 caaa 105  Q
    ||||    
T  19685981 caaa 19685978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 34652962 - 34653065
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| ||||| || |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  34652962 aaacaaaattattatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttagggttaatagtcatg 34653061  T
Q  102 caaa 105  Q
    ||||    
T  34653062 caaa 34653065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 4732045 - 4732146
Alignment:
Q  9 attactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaagca 108  Q
    ||||||| ||||||||||||||||||||||||||||  | ||||||| || ||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  4732045 attactatttcatgattaaaagctagggttaatagtcatccaattcctaatatcaattcatgtaattgcaagaagctagggttaatagtcatacaaagca 4732144  T
Q  109 at 110  Q
    ||    
T  4732145 at 4732146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 3195067 - 3194967
Alignment:
Q  5 cagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaa 104  Q
    |||||||| || |||| |||||||||||| ||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3195067 cagaattattatttcaggattaaaagctaaggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttagggttaatagtcatgcaa 3194968  T
Q  105 a 105  Q
    |    
T  3194967 a 3194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 19689464 - 19689361
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  19689464 aaacagaattactatttcaggattaaaagttagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagctagggttaatagtcatg 19689365  T
Q  102 caaa 105  Q
    ||||    
T  19689364 caaa 19689361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 9690674 - 9690453
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| |||||||| ||||||||| |||| |||||||||| ||||||||||||||| |||| || ||| |||||||||||||||||    
T  9690674 aaacataattactatttcaggattaaaaactagggttagtagtcgttcaattcctaagatcaatttatgtgattgaaataagctagggttaatagtcatg 9690575  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              |||||||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||| ||||||||    
T  9690574 caaacaatcgtacgaaaagcaatgaacacaaataattatgaataaagactaggttttcattga--tgtcaaagagagttcgtaacaaattatatggttca 9690477  T
Q  187 tagatcacaatagattcatctcatg 211  Q
     | ||||||| ||||||||||||||    
T  9690476 caaatcacaa-agattcatctcatg 9690453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 26337894 - 26337796
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||  ||||||||||||||||    
T  26337894 aaacagaattactatttcatgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaaactagggttaatagtcat 26337796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 33321131 - 33321234
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||| ||||| || ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||     
T  33321131 aaacagaattactatttcaggattaaaagttagggctagtagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcata 33321230  T
Q  102 caaa 105  Q
    ||||    
T  33321231 caaa 33321234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26548006 - 26547897
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||||||  ||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  26548006 caaacaggattactatatcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 26547907  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  26547906 acaaaacaat 26547897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26551565 - 26551456
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||||||  ||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  26551565 caaacaggattactatatcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 26551466  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  26551465 acaaaacaat 26551456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28562565 - 28562674
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||||||  ||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||| ||||| |||| ||||||||||||||||    
T  28562565 caaacaggattactatatcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtagttgcacgaagctagggttaatagtcat 28562664  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  28562665 acaaagcaat 28562674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28566133 - 28566242
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||||||  ||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||| ||||| |||| ||||||||||||||||    
T  28566133 caaacaggattactatatcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtagttgcacgaagctagggttaatagtcat 28566232  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  28566233 acaaagcaat 28566242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 40800122 - 40800231
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||| ||| |||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  40800122 caaacaggattactatttcaggattaaaaggtagtgttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 40800221  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  40800222 acaaaacaat 40800231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26726858 - 26726760
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| || |||||||||||||    
T  26726858 caaacagatttactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctatggttaatagtcat 26726760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 25185278 - 25185200
Alignment:
Q  22 gattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||||||  ||||||||| || |||||||||||| ||||||||||| |||||||| |||||||    
T  25185278 gattaaaagctagggttaatagtcattcaattcctaaaatcaatttatgtgattgcaagaagctagggttattagtcat 25185200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 2453186 - 2453142
Alignment:
Q  60 atcaatttatgtaattgcaagaagttagggttaatagtcatgcaa 104  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  2453186 atcaatttatgtggttgcaagaagttagggttaatagtcatgcaa 2453142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 13499 - 13251
Alignment:
Q  6 agaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgc--- 102  Q
    |||||||||| |||| |||||||||||||||||| ||||  || |||||| ||||||||||||||| |||| |||||||||||||||||||||||||       
T  13499 agaattactatttcaggattaaaagctagggttagtagtcatttaattcctaagatcaatttatgtgattgaaagaagttagggttaatagtcatgcaaa 13400  T
Q  103 -----------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttcataga 190  Q
               |||||||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  |||||||||||||||||| |||    
T  13399 caattatacaaaaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttcacaga 13302  T
Q  191 tcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
    |||||| |||||||||||||| || | || |||||||||| ||| ||||||||    
T  13301 tcacaa-agattcatctcatggct-taatcaatctaagagtttagctactcat 13251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 19967 - 19864
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  19967 aaacataattactatttcatgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagttagggttaatagtcatg 19868  T
Q  102 caaa 105  Q
    ||||    
T  19867 caaa 19864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 27516 - 27431
Alignment:
Q  20 atgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  27516 atgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaa 27431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 13498 - 13415
Alignment:
Q  22 gattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13498 gattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaa 13415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 11702794 - 11702897
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  11702794 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 11702893  T
Q  102 caaa 105  Q
    ||||    
T  11702894 caaa 11702897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 56089521 - 56089773
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| | ||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  56089521 aaacagaattactatttcaagattaaaagctagggttagtggtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttaatagtcatg 56089620  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              |||||||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||||||| ||||    
T  56089621 caaacaatcatacgaaaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatgattca 56089718  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
     ||||||||| |||||||| ||||| || | || |||||||||| ||| ||||||||    
T  56089719 cagatcacaa-agattcatttcatggct-taatcaatctaagagtttagctactcat 56089773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 10247732 - 10247629
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||| || |||| ||||||||| |||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  10247732 aaacagaattattatttcaggattaaaagttagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagttagggttaatagtcatg 10247633  T
Q  102 caaa 105  Q
    ||||    
T  10247632 caaa 10247629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3719702 - 3719801
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||| | ||||||| ||||||||||||||||    
T  3719702 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataaattcaagaagctagggttaatagtcat 3719801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 15851084 - 15850981
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||| ||||||||| |||| ||||||||||||||| |||||||     
T  15851084 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagataaatttatgtgattgaaagaagttagggttattagtcata 15850985  T
Q  102 caaa 105  Q
    ||||    
T  15850984 caaa 15850981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 10385842 - 10385760
Alignment:
Q  22 gattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaa 104  Q
    |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  10385842 gattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaa 10385760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18859691 - 18859582
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  18859691 caaacaggattactatttcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 18859592  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  18859591 acaaatcaat 18859582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3734226 - 3734131
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagt 97  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| |||||||||||||    
T  3734226 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagt 3734131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 13979045 - 13978942
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| | ||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||     
T  13979045 aaacagaattactatttcaggattaaaagctagggttagtggtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttagtagtcata 13978946  T
Q  102 caaa 105  Q
    ||||    
T  13978945 caaa 13978942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14701818 - 14701719
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||| ||||  ||||||||| || ||||||| || ||| | ||||||| ||||||||||||||||    
T  14701818 caaacagaattactaattcaggattaaaagctagggttagtagtcattcaattcctaatatcaattcatataaattcaagaagctagggttaatagtcat 14701719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 19928800 - 19928563
Alignment:
Q  17 ttcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat--------------gc 102  Q
    ||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||              |     
T  19928800 ttcatgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcagaaga 19928701  T
Q  103 aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttcatagatcacaatagat 201  Q
    |||||| | | ||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  |||||||||||||||||| ||||||||| ||||    
T  19928700 aaagcattaagcacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttcacagatcacaa-agat 19928604  T
Q  202 tcatctcatgactctgattaatctaagagcttaactactcat 243  Q
    ||||||||| ||| | || |||||||||| ||| ||||||||    
T  19928603 tcatctcattact-taatcaatctaagagtttagctactcat 19928563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 49640022 - 49640120
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  49640022 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 49640120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49636729 - 49636824
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagt 97  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| |||||||||||||    
T  49636729 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagt 49636824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 33400539 - 33400642
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| ||||  |||||||| |||||||| ||||  ||||||| | ||||||||||||||| ||||||||||| ||||||||||||||| |    
T  33400539 aaacaaaattactatttcagaattaaaagttagggttagtagtcattcaattactaagatcaatttatgtgattgcaagaagctagggttaatagtcaag 33400638  T
Q  102 caaa 105  Q
    ||||    
T  33400639 caaa 33400642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 17670308 - 17670221
Alignment:
Q  23 attaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaagcaat 110  Q
    |||||||| |||||||||||||  ||||||||| || ||||||| ||||||||||| |||| |||||||||||||||| |||| ||||    
T  17670308 attaaaaggtagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcatacaaaacaat 17670221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 26703698 - 26703801
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||| | |||| |||||| ||| |||| |||||||     
T  26703698 aaacataattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatatgattgaaagaagctagagttagtagtcata 26703797  T
Q  102 caaa 105  Q
    ||||    
T  26703798 caaa 26703801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 13978919 - 13978824
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  13978919 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 13978824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 23653195 - 23653089
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagt-agtt--caattccgaagatcaatttatgtaattgcaagaagttagggttaatagtc 98  Q
    |||||||||||||| |||| |||||||||||||||||| |||| | ||   ||| ||  ||||||||| |  | |||| ||||||||||| |||||||||    
T  23653195 aaacagaattactatttcaggattaaaagctagggttagtagtcaattaataatacctgagatcaattaacatgattgaaagaagttaggtttaatagtc 23653096  T
Q  99 atgcaaa 105  Q
    |||||||    
T  23653095 atgcaaa 23653089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 11560610 - 11560578
Alignment:
Q  103 aaagcaatgaacacaaataatcttgaataaaga 135  Q
    ||||||||||||||||||||| |||||||||||    
T  11560610 aaagcaatgaacacaaataattttgaataaaga 11560578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 4170 - 3918
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  4170 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttaatagtcatg 4071  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              ||| |||||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  |||||||||||||||| |    
T  4070 caaccaatcatacgaaaaccaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttta 3973  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
     | ||||||| |||||| ||||||| || | ||||||||||||| ||| ||||||||    
T  3972 catatcacaa-agattcttctcatggct-taattaatctaagagtttagctactcat 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 12746717 - 12746496
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  12746717 aaacagaattactatttcacgattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttaatagtcatg 12746618  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagtt-caaacaaattacatggttca 186  Q
    |              |||||||||||||||||||||  ||||||||||||||| || ||||||  |   ||||||||||   ||||||||||||||||||    
T  12746617 caaacaatcatacgaaaagcaatgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttattaacaaattacatggttca 12746520  T
Q  187 tagatcacaatagattcatctcatg 211  Q
     ||||||||| |||| |||||||||    
T  12746519 cagatcacaa-agatccatctcatg 12746496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 34502254 - 34502151
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  34502254 aaacagaattactacttcaagattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagctagggttaatagtcatg 34502155  T
Q  102 caaa 105  Q
    ||||    
T  34502154 caaa 34502151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 35027340 - 35027592
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat- 100  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||     
T  35027340 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttagtagtcata 35027439  T
Q  101 -------------gcaaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
                 | |||||| | | ||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||||||||||||    
T  35027440 taaacaatcataagaaaagcattaagcacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttca 35027537  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
     ||||||||| |||||||||||||| || | || |||||||||||||| ||||||||    
T  35027538 cagatcacaa-agattcatctcatggct-taatcaatctaagagcttagctactcat 35027592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14969580 - 14969471
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  14969580 caaacaggattactatttcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 14969481  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  14969480 acaaagcaat 14969471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 31262682 - 31262579
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||| ||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||    
T  31262682 aaacagaactactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttagagttaataatcatg 31262583  T
Q  102 caaa 105  Q
    ||||    
T  31262582 caaa 31262579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 33679396 - 33679498
Alignment:
Q  3 aacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgc 102  Q
    |||| |||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||    
T  33679396 aacataattactatttcaggattaaaagctagggttagtagtcattcaattcctaagataaatttatgtgattgaaagaagttagggttaatagtcatgc 33679495  T
Q  103 aaa 105  Q
    |||    
T  33679496 aaa 33679498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 9313992 - 9314095
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||| ||||| ||||| ||||  ||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  9313992 aaacagaattactatttcaggattaagagctatggttagtagtcattcaattcctaagatcaatttatgtgattgcaataagctagggttaatagtcatg 9314091  T
Q  102 caaa 105  Q
    ||||    
T  9314092 caaa 9314095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13095904 - 13096003
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||||||||||||| |||||||| ||||  ||||||||| || ||||||| |||||||| ||||||||||||||||||||||||    
T  13095904 caaacaggattactatttcatgattaaaagttagggttagtagtcattcaattcctaatatcaattcatgtaatttcaagaagttagggttaatagtcat 13096003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 28894688 - 28894791
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||     
T  28894688 aaacagaattactatttcaggattaaaagttagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcata 28894787  T
Q  102 caaa 105  Q
    ||||    
T  28894788 caaa 28894791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 5618516 - 5618618
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||||||||||||  |||  ||||||||  || |||||||||||| ||||||||||| |||||||||||||||||    
T  5618516 aaacagaattactatttcaggattaaaagctagggttagaagtcattcaattcttaa-atcaatttatgtgattgcaagaagctagggttaatagtcatg 5618614  T
Q  102 caaa 105  Q
    ||||    
T  5618615 caaa 5618618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22920441 - 22920343
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||| |||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  22920441 caaacagaattactaattcaggataaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 22920343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 28117751 - 28117652
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| |||||||||||||||||| ||||  ||||||||| || |||||||||||| ||||||||||| ||||||||||| |||||    
T  28117751 aaacaaaattactatttcaggattaaaagctagggttagtagtcattcaattcctaaaatcaatttatgtgattgcaagaagctagggttaataatcatg 28117652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 2330537 - 2330438
Alignment:
Q  6 agaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||||||||| |||| |||||||||||||||||| ||||  ||||||| | ||||||||||||||| |||| |||||  ||| |||||||||||||||||    
T  2330537 agaattactatttcaggattaaaagctagggttagtagtcattcaatttctaagatcaatttatgttattgaaagaatctagagttaatagtcatgcaaa 2330438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11410677 - 11410578
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||| ||||   |||||||| || ||||||| |||||||| ||||||| ||||||||||||||||    
T  11410677 caaacaggattactatttcaggattaaaagctagggttagtagtcaatcaattcctaatatcaattcatgtaatttcaagaagctagggttaatagtcat 11410578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 17696500 - 17696397
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||| | |||| |||||| ||| |||| || ||||  ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||     
T  17696500 aaacagaattacaatttcaggattaagagccagggctagtagtcattcaatttctaagatcaatttatgtgattgcaagaagttagggttaatagtcata 17696401  T
Q  102 caaa 105  Q
    ||||    
T  17696400 caaa 17696397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 2331193 - 2331090
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||  || |||||||||||||||| | |||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||| | ||||||||||    
T  2331193 aaacagaattgatatttcatgattaaaagctggtgttagtagtcattcaattcctaagatcaatttatgttattgaaagaagctaggatcaatagtcatg 2331094  T
Q  102 caaa 105  Q
    ||||    
T  2331093 caaa 2331090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17231768 - 17231669
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||| | ||||  |||||||| |||||||||||||  ||||||||| || ||||||| |||||||| ||||||| ||||||||||||||||    
T  17231768 caaacaggattacaatttcagaattaaaagatagggttaatagtcattcaattcctaatatcaattcatgtaatttcaagaagatagggttaatagtcat 17231669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 3827069 - 3827131
Alignment:
Q  48 tcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaagcaat 110  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  3827069 tcaattcctaatatcaattcatgtaattgcaagaagttagggttaatagtcatacaaagcaat 3827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 15579130 - 15579189
Alignment:
Q  10 ttactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttat 69  Q
    |||||| |||||||||||||  |||||||| ||||  ||||||||| |||||||||||||    
T  15579130 ttactatttcatgattaaaatatagggttagtagtcattcaattcctaagatcaatttat 15579189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 20527901 - 20527956
Alignment:
Q  283 gagagtttcgtagttgccgatgttgctcctgaatttctttctgattggtgttgttg 338  Q
    |||||||||||||||||||| ||||||||||||| | |||   |||||||||||||    
T  20527901 gagagtttcgtagttgccgacgttgctcctgaatctattttcaattggtgttgttg 20527956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 5618421 - 5618457
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggtt 38  Q
    |||||||||||||| |||| |||||||||||||||||    
T  5618421 aaacagaattactatttcaggattaaaagctagggtt 5618457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 1503640 - 1503742
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  1503640 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 1503739  T
Q  102 caa 104  Q
    |||    
T  1503740 caa 1503742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 1506844 - 1506946
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  1506844 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 1506943  T
Q  102 caa 104  Q
    |||    
T  1506944 caa 1506946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13518217 - 13518108
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  13518217 caaacaggattactatttcatgattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 13518118  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  13518117 acaaatcaat 13518108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18011863 - 18011755
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||  ||||||||| || ||||||| |||||||||||||||| ||||||||||||||||    
T  18011863 caaacaggattactatttcaggattaaaagttagggttaatagtcattcaattcctaatatcaattcatgtaattgcaagaagctagggttaatagtcat 18011764  T
Q  101 gcaaagcaa 109  Q
     ||||||||    
T  18011763 acaaagcaa 18011755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 30719686 - 30719583
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| || | ||||||||| ||| |||| ||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  30719686 aaacagaattactattttaggattaaaagttagagttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttagggttaatagtcatg 30719587  T
Q  102 caaa 105  Q
    ||||    
T  30719586 caaa 30719583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 38326478 - 38326581
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||| || |||| |||||||||||||||||  ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  38326478 aaacagaattattatttcaggattaaaagctagggttggtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 38326577  T
Q  102 caaa 105  Q
    ||||    
T  38326578 caaa 38326581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11059712 - 11059603
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||||||||||||| ||| |||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  11059712 caaacaggattactatttcatgattaaaagttagtgttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 11059613  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  11059612 acaaagcaat 11059603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 4577763 - 4577661
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||| ||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  4577763 aaacagaattactatttcaggattaaaagctagg-ttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagatagggttaatagtcatg 4577665  T
Q  102 caaa 105  Q
    ||||    
T  4577664 caaa 4577661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22592427 - 22592328
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||  |||||| || ||| | ||||||| ||||||||||||||||    
T  22592427 caaacagaattactaattcatgattaaaagctagggttaatagtcattcaattcctaatctcaattcatataaattcaagaagctagggttaatagtcat 22592328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 38326266 - 38326178
Alignment:
Q  17 ttcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaa 105  Q
    |||| |||||||||||||||||  ||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  38326266 ttcaggattaaaagctagggttggtagtcattcaattcctaagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaa 38326178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 15704184 - 15704275
Alignment:
Q  9 attactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| |||||||| || |||||||||||||||||||||    
T  15704184 attactatttcaagattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaatttcaggaagttagggttaatagtcat 15704275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 18938807 - 18938709
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  18938807 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 18938709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 38316254 - 38316357
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| || ||||| |||||||     
T  38316254 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctacggttagtagtcata 38316353  T
Q  102 caaa 105  Q
    ||||    
T  38316354 caaa 38316357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29435663 - 29435564
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||| ||||   |||||||| || ||||||| |||||||| ||||||| ||||||||||||||||    
T  29435663 caaacaggattactatttcaggattaaaagctagggttagtagtcaatcaattcctaatatcaattcatgtaatttcaagaagctagggttaatagtcat 29435564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 40677979 - 40678082
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| |  |||||||||||| |||| |||||| |||||||| |||||||     
T  40677979 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctagcatcaatttatgtgattgaaagaagctagggttagtagtcata 40678078  T
Q  102 caaa 105  Q
    ||||    
T  40678079 caaa 40678082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 40678105 - 40678200
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  40678105 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 40678200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 15719476 - 15719529
Alignment:
Q  47 ttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||| ||| || ||||||| |||| ||| ||||||||||||||||||||||||    
T  15719476 ttcaactcctaatatcaattcatgtgatttcaagaagttagggttaatagtcat 15719529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14187914 - 14187805
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| |||||||||||||||||||||||| ||||||||    
T  14187914 caaacaggattactacttcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcaagaagttagggtttatagtcat 14187815  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  14187814 acaaagcaat 14187805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27863760 - 27863869
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||  ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  27863760 caaacagaattactatttcaggattaaaagttagggttaatagtcattcaattcctaagatcaattcatgtaattgcaagaagctagggttaatagtcat 27863859  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  27863860 acaaaacaat 27863869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 9467039 - 9466936
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||     
T  9467039 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcata 9466940  T
Q  102 caaa 105  Q
    ||||    
T  9466939 caaa 9466936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 30645385 - 30645282
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| ||||  |||||||| |||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  30645385 aaacagaattactatttcaaaattaaaagttagggttagtagtcattcaattcctaagatcaatttatgtgattgtaagaagttagggttaatagtcatg 30645286  T
Q  102 caaa 105  Q
    ||||    
T  30645285 caaa 30645282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5964169 - 5964060
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||||||| |||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  5964169 caaacaggattactatttcaggattaaaagctagtgttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 5964070  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  5964069 acaaagcaat 5964060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20262468 - 20262369
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||  |||||||||||||||||||||||  ||||||||| || ||||||| |||||||| ||||||||||||||||||||||||    
T  20262468 caaacaggattactatttctggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaatttcaagaagttagggttaatagtcat 20262369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 21049098 - 21048999
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||  |||||||||||||||||||||||  ||||||||| || ||||||| |||||||| ||||||||||||||||||||||||    
T  21049098 caaacaggattactatttctggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaatttcaagaagttagggttaatagtcat 21048999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 39660164 - 39660267
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||     
T  39660164 aaacaaaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcata 39660263  T
Q  102 caaa 105  Q
    ||||    
T  39660264 caaa 39660267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 22654167 - 22654066
Alignment:
Q  9 attactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaagca 108  Q
    ||||||| |||| ||||||||| | |||||||||||  ||||||||| || ||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  22654167 attactatttcaggattaaaagttggggttaatagtcattcaattcctaatatcaattcatgtaattgcaagaagctagggttaatagtcatacaaagca 22654068  T
Q  109 at 110  Q
    ||    
T  22654067 at 22654066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24434944 - 24434846
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  24434944 caaacagaattattaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 24434846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24903690 - 24903789
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||| ||||  ||||||||| || ||||||| || ||| | ||||||| ||||||||||||||||    
T  24903690 caaacagaattactaattcaggattaaaagctagggttagtagtcattcaattcctaatatcaattcatataaattcaagaagctagggttaatagtcat 24903789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 5827938 - 5827717
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||  ||||  ||||||||||||||||| ||||  ||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||| |    
T  5827938 aaacagaattactctttcagaattaaaagctagggttagtagtcattcaattcctaagattaatttatgtgattgaaagaagctagggttaatagtcaag 5827839  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              |||||||||||||||||||||  ||||||||||||||| || | ||||  |  |||||||| |||  |||||| |||||||||||    
T  5827838 caaacaatcataagaaaagcaatgaacacaaataattctgaataaagactaggttttctttga--tgtaaaagagaattcttaacaaactacatggttca 5827741  T
Q  187 tagatcacaatagattcatctcatg 211  Q
     ||||||||| ||||||||||||||    
T  5827740 cagatcacaa-agattcatctcatg 5827717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 13332000 - 13331902
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||| ||||  ||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||    
T  13332000 aaacagaattactatttcagaattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttagtagtcat 13331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 31981260 - 31981162
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| || |||||||||||| |||| |||||| || |||||||||||||    
T  31981260 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaatatcaatttatgtgattgtaagaagctatggttaatagtcat 31981162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17013238 - 17013337
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||  || ||||||| || ||| | ||| ||| ||||||||||||||||    
T  17013238 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcataatatcaattcatataaattcaataagctagggttaatagtcat 17013337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17543963 - 17543864
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||  || ||||||| || ||| | ||| ||| ||||||||||||||||    
T  17543963 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcataatatcaattcatataaattcaataagctagggttaatagtcat 17543864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24444990 - 24444892
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  24444990 caaacagaattattaattcaggattaaaagctaggattaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 24444892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 31984901 - 31984799
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||| || |||| |||||||||||| | ||| ||||  ||||||||| ||||||||||||||| |||| |||||| || ||||||||||||||    
T  31984901 aaacagaattattatttcaggattaaaagctatgattagtagtcattcaattcctaagatcaatttatgtgattgtaagaagctatggttaatagtcatg 31984802  T
Q  102 caa 104  Q
    |||    
T  31984801 caa 31984799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 14627229 - 14627143
Alignment:
Q  117 aaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttcatagatcacaatagattcat 205  Q
    |||||||  ||||||| ||||||| ||||| |||  ||  |||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  14627229 aaataattatgaataatgactaggtttccaatga--tatcaaagggagttcaaacaaattacatggttcacagattacaatagattcat 14627143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 44007816 - 44007779
Alignment:
Q  281 ccgagagtttcgtagttgccgatgttgctcctgaattt 318  Q
    |||||||||||||||||||| |||||||||||||||||    
T  44007816 ccgagagtttcgtagttgccaatgttgctcctgaattt 44007779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 18696177 - 18696231
Alignment:
Q  47 ttcaattccgaagatcaatttatgtaattgcaag-aagttagggttaatagtcat 100  Q
    ||||||||| || ||||||| |||||||| |||| ||||||||||||||||||||    
T  18696177 ttcaattcctaatatcaattcatgtaatttcaaggaagttagggttaatagtcat 18696231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 7149 - 7046
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||    
T  7149 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaatttctaagatcaatttatgtgattgcaagaagctagggttaatagtcatg 7050  T
Q  102 caaa 105  Q
    ||||    
T  7049 caaa 7046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20100556 - 20100447
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||| | || ||||||| |||||||||||||||| ||||||||||||||||    
T  20100556 caaacaggattactatttcaggattaaaagctagggttaatagtcattcaatttctaatatcaattcatgtaattgcaagaagctagggttaatagtcat 20100457  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  20100456 acaaagcaat 20100447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22257170 - 22257061
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||| ||||||||||||||||||  ||||||||| || ||||||| |||||||||||||||| ||||||||||||||||    
T  22257170 caaacaggattactatttcaggattgaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcaagaagctagggttaatagtcat 22257071  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  22257070 acaaagcaat 22257061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 748247 - 748354
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| |||||||||||||||| ||||||||| ||||||    
T  748247 caaacaggattactatttcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcaagaagctagggttaaaagtcat 748346  T
Q  101 gcaaagca 108  Q
     |||||||    
T  748347 acaaagca 748354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 22083650 - 22083752
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||  ||| ||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  22083650 aaacagaattactatttcaggattaaaagctaga-ttagtagtcattcaattcctaagatcaatttatgtgattgcaagaagttagggttaatagtcatg 22083748  T
Q  102 caaa 105  Q
    ||||    
T  22083749 caaa 22083752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 26153062 - 26152964
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||    
T  26153062 aaacagaattactatttcaagattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagttagggttagtagtcat 26152964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 3541375 - 3541625
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat- 100  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  || |||||| ||||||||||||||| |||| |||||| ||||||||||||||||     
T  3541375 aaacagaattactatttcaggattaaaagctagggttagtagtcatttaattcctaagatcaatttatgtgattgaaagaagctagggttaatagtcatt 3541474  T
Q  101 -------------gcaaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttcaaacaaattacatggttcat 187  Q
                 | |||||||||||||||||||||  ||||| ||||||||| || ||||||  |   |||||||||||   |||||||||||||  |     
T  3541475 caaacaatcatacgaaaagcaatgaacacaaataattctgaatgaagactaggttttcattga--tgttaaagagagttc-ttcaaattacatggtcaac 3541571  T
Q  188 agatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
    ||||||||| ||||||||||||||||| | || |||||||||| ||| ||||||||    
T  3541572 agatcacaa-agattcatctcatgact-taatcaatctaagagtttagctactcat 3541625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22232833 - 22232942
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||  || |||||| || ||||||| |||||||||||||||| ||||||||||||||||    
T  22232833 caaacagaattactatttcaggattgaaagctagggttaatagtcatttaattcctaatatcaattcatgtaattgcaagaagctagggttaatagtcat 22232932  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  22232933 acaaaacaat 22232942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22253906 - 22253797
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||  || |||||| || ||||||| |||||||||||||||| ||||||||||||||||    
T  22253906 caaacagaattactatttcaggattgaaagctagggttaatagtcatttaattcctaatatcaattcatgtaattgcaagaagctagggttaatagtcat 22253807  T
Q  101 gcaaagcaat 110  Q
     |||| ||||    
T  22253806 acaaaacaat 22253797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23598969 - 23599067
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| || |||||||||||||    
T  23598969 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctatggttaatagtcat 23599067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26460378 - 26460280
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  26460378 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 26460280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 8397749 - 8397648
Alignment:
Q  9 attactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaagca 108  Q
    ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||| |||| |||| ||    
T  8397749 attactatttcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaataatcatacaaaaca 8397650  T
Q  109 at 110  Q
    ||    
T  8397649 at 8397648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 2349364 - 2349276
Alignment:
Q  22 gattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgcaaagcaat 110  Q
    |||||||||||||||||||||||  ||||||| | || ||||||| |||||||||||||||| |||||||||||||||| |||| ||||    
T  2349364 gattaaaagctagggttaatagtcattcaatttctaatatcaattcatgtaattgcaagaagctagggttaatagtcatacaaaacaat 2349276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 710223 - 710322
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||  ||||||||| || ||||||| || ||| | ||||||| ||||||||||||||||    
T  710223 caaacagaattactaattcaggattaaaatctagggttagtagtcattcaattcctaatatcaattcatataaattcaagaagctagggttaatagtcat 710322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2251783 - 2251685
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  2251783 caaacagaattagtaattcaggattaaaaactagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 2251685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 6964198 - 6964095
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| ||||||||| |||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||     
T  6964198 aaacaaaattactatttcaggattaaaagttagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaaggtagggttagtagtcata 6964099  T
Q  102 caaa 105  Q
    ||||    
T  6964098 caaa 6964095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26182214 - 26182116
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||| ||||||||||||| |||||||||||||||||||||||  ||||||||  || ||||||| || ||||| ||||||| ||||||||||||||||    
T  26182214 caaacaaaattactaattcaggattaaaagctagggttaatagtcattcaattcttaatatcaattcatataatt-caagaagctagggttaatagtcat 26182116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 38431304 - 38431201
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||  ||||  ||||||| | ||||||||||||||| |||| |||||| |||||||| |||||||     
T  38431304 aaacagaattactatttcaggattaaaagctagggttggtagtcattcaatttctaagatcaatttatgtgattgaaagaagctagggttagtagtcata 38431205  T
Q  102 caaa 105  Q
    ||||    
T  38431204 caaa 38431201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 43549104 - 43549001
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||   |||||||| ||| ||||||||||| |||| |||||| |||||||| |||||||     
T  43549104 aaacataattactatttcatgattaaaagctagggttagtagtcaatcaattcctaagttcaatttatgtgattgaaagaagctagggttagtagtcata 43549005  T
Q  102 caaa 105  Q
    ||||    
T  43549004 caaa 43549001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 44017999 - 44018102
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| |  |||||||||||| |||| |||||| |||||||| |||||||     
T  44017999 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctagcatcaatttatgtgattgaaagaagctagggttagtagtcata 44018098  T
Q  102 caaa 105  Q
    ||||    
T  44018099 caaa 44018102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5826914 - 5827023
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||| ||||||||| |||  ||||||||  || ||||||| ||||||||||| |||| || |||||||||||||    
T  5826914 caaacaggattactatttcaggattaaaagttagggttaacagtcattcaattcataatatcaattcatgtaattgcacgaagctatggttaatagtcat 5827013  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  5827014 acaaagcaat 5827023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23467353 - 23467440
Alignment:
Q  17 ttcatgattaaaagctagggttaatagtagttcaatt-ccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatgca 103  Q
    |||| |||||||||||||||||| ||||  || |||| || ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  23467353 ttcaggattaaaagctagggttagtagtcattaaatttcctaagatcaatttatgtgattgtaagaagttagggttaatagtcatgca 23467440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 12803472 - 12803569
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||| |||||||| |||| |||||||||||||||| | ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||    
T  12803472 aaacaaaattactatttcaggattaaaagctagggt-agtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttagtagtcat 12803569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11825561 - 11825660
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||  |||||||||  | ||| |   ||||||||||| |||| ||||||||||||||||    
T  11825561 caaacaggattactatttcaggattaaaagttagggttaatagtcattcaattcctgatatcgagacatgtaattgcacgaagctagggttaatagtcat 11825660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 9765304 - 9765226
Alignment:
Q  281 ccgagagtttcgtagttgccgatgttgctcctgaatttctttctgattggtgttgttg-tgtgcataccatagctgctc 358  Q
    ||||||||||| |||||||||| ||||||||||||||| ||   ||||| |||||||| |||||||||| |||||||||    
T  9765304 ccgagagtttcctagttgccgacgttgctcctgaatttattctcgattgatgttgttgttgtgcataccgtagctgctc 9765226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 44018125 - 44018220
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  |||||||||| |||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  44018125 cacaaataattctgaataaagattaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 44018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 17601432 - 17601382
Alignment:
Q  161 agagttcaaacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||||| |||||| ||||| | || |||||||||||||||||||    
T  17601432 agagttcaaacaagttacattgttcacatattacaatagattcatctcatg 17601382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 27085 - 27184
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||| | ||||||||||||||||||||||||    
T  27085 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataaattcaagaagttagggttaatagtcat 27184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 29233 - 28981
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| || ||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||| ||||||||||||    
T  29233 aaacagaattactatttcaggaataaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctaggtttaatagtcatg 29134  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              ||| |  ||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||||||||||||    
T  29133 caatcaatcatatgaaaatctttgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttca 29036  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
     ||||||||| |||||||||||||| || | || |||||||||| ||| ||||||||    
T  29035 cagatcacaa-agattcatctcatggct-taatcaatctaagagtttagctactcat 28981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 53030 - 52778
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||| || |||| ||||||||| |||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||| ||||||||||||    
T  53030 aaacagaattattatttcaagattaaaagatagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctaggattaatagtcatg 52931  T
Q  102 c--------------aaagcaatgaacacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttc-aaacaaattacatggttca 186  Q
    |              |||||  ||||||||||||||  ||||||||||||||| || ||||||  |   |||||||||||  ||||||||||||||||||    
T  52930 caaacaatcatacgaaaagctttgaacacaaataattctgaataaagactaggttttcattga--tgtcaaagagagttcttaacaaattacatggttca 52833  T
Q  187 tagatcacaatagattcatctcatgactctgattaatctaagagcttaactactcat 243  Q
     ||||||||| |||| ||||||||| || | || |||||||||| ||| ||||||||    
T  52832 cagatcacaa-agatacatctcatgtct-taatcaatctaagagtttagctactcat 52778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37641780 - 37641671
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||  ||||||||| || ||||||| ||||||||||| |||| ||||||||||||||||    
T  37641780 caaacaggattactatttcaggattaaaagttagggttaatagtcattcaattcctaatatcaattcatgtaattgcacgaagctagggttaatagtcat 37641681  T
Q  101 gcaaagcaat 110  Q
     |||||||||    
T  37641680 acaaagcaat 37641671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24200450 - 24200548
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  24200450 caaacagaattactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 24200548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 33898237 - 33898134
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  ||||||||| || |||||||||||| |||| |||||| |||||||| |||||||     
T  33898237 aaacagaattactaattcaagattaaaagctagggttagtagtcattcaattcctaacatcaatttatgtgattgaaagaagctagggttagtagtcata 33898138  T
Q  102 caaa 105  Q
    ||||    
T  33898137 caaa 33898134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 3087932 - 3088035
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||| |  ||| ||||||||||||||| |||||||     
T  3087932 aaacagaattactatttcaggattaaaagctagggttagtagttattcaattcctaagatcaatttatatggttgaaagaagttagggttattagtcata 3088031  T
Q  102 caaa 105  Q
    ||||    
T  3088032 caaa 3088035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16839139 - 16839237
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  16839139 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 16839237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16849069 - 16849167
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  16849069 caaacagaattactaattcaggattaaaagctagggttaagagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 16849167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17902993 - 17903092
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||  ||||||||| || ||||||| |||||||| ||||||| ||||||||||||||||    
T  17902993 caaacaggattactatttcaggattaaaagttagggttaatagtcattcaattcctaatatcaattcatgtaatttcaagaagctagggttaatagtcat 17903092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20981272 - 20981173
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||| ||||| ||||||| |||||||||||||||||| ||||  ||||||||  || ||||||| |||||||| ||||||||||||||||||||||||    
T  20981272 caaacaaaattattaattcaggattaaaagctagggttagtagtcattcaattcttaatatcaattcatgtaatttcaagaagttagggttaatagtcat 20981173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28918287 - 28918188
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||||||||||| |||| |||||||||||||||||||||||  ||||||||| || |||||||||| ||||| || || | ||||||||||||||||    
T  28918287 caaacagaattactatttcaggattaaaagctagggttaatagtcattcaattcctaatatcaatttatttaatttcatgatgctagggttaatagtcat 28918188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 18392304 - 18392201
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||  ||||||| | ||||||||||||||| |||| |||||| |||||||| |||||||     
T  18392304 aaacagaattactatttcaggattaaaagttagggttagtagtcattcaatttctaagatcaatttatgtgattgaaagaagctagggttagtagtcata 18392205  T
Q  102 caaa 105  Q
    ||||    
T  18392204 caaa 18392201  T

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Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20964369 - 20964270
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||  ||||||||| || ||||||  |||||||| ||||||| || |||||||||||||    
T  20964369 caaacaaaattactaattcaggattaaaagctagggttagtagtcattcaattcctaatatcaatacatgtaatttcaagaagctatggttaatagtcat 20964270  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 34552891 - 34552994
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||||||||| |||||||||||||  ||||||| | ||||||||||||||| |||| |||||  |||||||| |||||||     
T  34552891 aaacagaattactatttcaggattaaaagatagggttaatagtcattcaattactaagatcaatttatgtgattgaaagaaactagggttagtagtcata 34552990  T
Q  102 caaa 105  Q
    ||||    
T  34552991 caaa 34552994  T

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Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 49716283 - 49716184
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| ||||||| |||| |||||||||||||||||| ||||   |||||||| || ||||||| |||||||| ||||||| ||||||||||||||||    
T  49716283 caaacagtattactatttcaagattaaaagctagggttagtagtcaatcaattcctaatatcaattcatgtaatttcaagaagctagggttaatagtcat 49716184  T

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Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 23441491 - 23441594
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| ||| |||||||||||||| ||||  ||||||||| |  |||||||||||| |||| |||||| |||||||| |||||||     
T  23441491 aaacagaattactatttcaggataaaaagctagggttagtagtcattcaattcctagcatcaatttatgtgattgaaagaagctagggttagtagtcata 23441590  T
Q  102 caaa 105  Q
    ||||    
T  23441591 caaa 23441594  T

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Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 49719750 - 49719667
Alignment:
Q  17 ttcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||| |||||||||||||||||| ||||   |||||||| || ||||||| |||||||| ||||||| ||||||||||||||||    
T  49719750 ttcaagattaaaagctagggttagtagtcaatcaattcctaatatcaattcatgtaatttcaagaagctagggttaatagtcat 49719667  T

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Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 6195729 - 6195626
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||| |||||||| |||| ||||||||| || ||||  ||||  ||||||||| ||||||||||||||| |||| ||||||  ||||||| |||||||     
T  6195729 aaacataattactatttcaagattaaaagttatggttggtagtcattcaattcctaagatcaatttatgtgattgaaagaagccagggttagtagtcata 6195630  T
Q  102 caaa 105  Q
    ||||    
T  6195629 caaa 6195626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 23441617 - 23441712
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||| | ||||||||  |||  |||||||||||||||||| ||||||||| |||||||| |||||    
T  23441617 cacaaataattctgaataaagactaggttttcattgaagtcaaaaagag--ttcttaacaaattacatggttcacagatcacaa-agattcatatcatg 23441712  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 33898111 - 33898016
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  33898111 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 33898016  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 50197167 - 50197230
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaat 65  Q
    ||||||||| |||| |||| ||||||||||||| |||| ||||  ||||||||| |||||||||    
T  50197167 aaacagaataactatttcaagattaaaagctagagttagtagtcattcaattcctaagatcaat 50197230  T

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Target: scaffold0911 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 4474 - 4371
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  ||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||     
T  4474 aaacagaattactatttcaggattaaaagctagggttagtagtcattcaattcctaagatcaatttatgtgattgaaagaagctagggttagtagtcata 4375  T
Q  102 caaa 105  Q
    ||||    
T  4374 caaa 4371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 4350 - 4255
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatg 211  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  4350 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatg 4255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28866 - 28965
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  28866 caaacaggattactaattcaagattaaaagctagggttagtagtcattcaattcctaatatcaattcatataatttcaagaagctagggttaatagtcat 28965  T

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Target: scaffold0067 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27274 - 27176
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||||||||||||||| ||||||||| |||||||||||||  ||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||    
T  27274 caaacagaattactaattcaggattaaaagttagggttaatagtcattcaattcctaatatcaattcatataatt-caagaagctagggttaatagtcat 27176  T

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Target: scaffold0062 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 53096 - 53187
Alignment:
Q  9 attactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||||| |||| |||||||||||||||||||||||  ||||||||| || ||||||| |||||||| || |||||||||||||||||||||    
T  53096 attactatttcaagattaaaagctagggttaatagtcattcaattcctaatatcaattcatgtaatttcaggaagttagggttaatagtcat 53187  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 68033 - 68086
Alignment:
Q  47 ttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    ||||| ||| || ||||||| |||| ||| ||||||||||||||||||||||||    
T  68033 ttcaactcctaatatcaattcatgtgatttcaagaagttagggttaatagtcat 68086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1048 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1048
Description:

Target: scaffold1048; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1314 - 1216
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcat 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||  ||||||||| || ||||||| || ||||| ||| ||| ||||||||||||||||    
T  1314 caaacagatttactaattcaggattaaaagctagggttaatagtcattcaattcctaatatcaattcatataatt-caaaaagctagggttaatagtcat 1216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 227259 - 227157
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaagttagggttaatagtcatg 101  Q
    ||||||||||| || |||| |||||||||||| | ||| ||||  ||||||||| ||||||||||||||| |||| |||||| || ||||||||||||||    
T  227259 aaacagaattattatttcaggattaaaagctatgattagtagtcattcaattcctaagatcaatttatgtgattgtaagaagctatggttaatagtcatg 227160  T
Q  102 caa 104  Q
    |||    
T  227159 caa 227157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 2102 - 2022
Alignment:
Q  2 aaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaatttatgtaattgcaagaa 82  Q
    |||||||||||||| |||| |||||||||||||||||| ||||  |||| |||| ||||||||||||||| |||| |||||    
T  2102 aaacagaattactatttcaggattaaaagctagggttagtagtcattcagttcctaagatcaatttatgtgattgaaagaa 2022  T

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Target: scaffold0273 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 20018 - 20144
Alignment:
Q  114 cacaaataatcttgaataaagactaggattccattgaattaaaaaagagagttca-aacaaattacatggttcatagatcacaatagattcatctcatga 212  Q
    ||||||||||  ||||||||||||||| || ||||||  | |||  ||||||||  |||||||||||||||||| ||||||||| ||||||||||||||     
T  20018 cacaaataattctgaataaagactaggttttcattgatgtcaaa--gagagttcttaacaaattacatggttcacagatcacaa-agattcatctcatgg 20114  T
Q  213 ctctgattaatctaagagcttaactactcat 243  Q
    || | || |||||||||| ||| ||||||||    
T  20115 ct-taatcaatctaagagtttagctactcat 20144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2361 - 2298
Alignment:
Q  1 caaacagaattactaattcatgattaaaagctagggttaatagtagttcaattccgaagatcaa 64  Q
    ||||||| ||||||| |||| |||||||||||||||||| ||||  ||||||||| || |||||    
T  2361 caaacaggattactatttcaggattaaaagctagggttagtagtcattcaattcctaatatcaa 2298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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