View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11515_high_15 (Length: 356)
Name: NF11515_high_15
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 36061785 - 36062112
Alignment:
| Q |
17 |
gaaatccacaattatgaatctacgaccgtgatatgtaagcccaaactcaannnnnnngatgtctccgcgttggtaatgtggccgcaatcgaggcctattt |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36061785 |
gaaatccacaattatgagtctacgaccgtgatatgtgagcccaaactcaatttttttgatgtctccgcgttggtaatgtggccgcaatcgaggcctattt |
36061884 |
T |
|
| Q |
117 |
aactataaatctcagtaaaatcacagattacaacaaaaccgtgaacatgaccgcaaactcaatctaaaaccttgatatttaagcacatgagaactatctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36061885 |
aactataaatctcagtaaaatcacagattacaacaaaaccgtgaacatgaccgcaacctcaatctaaaaccttgatatttaagcacatgagaactatctt |
36061984 |
T |
|
| Q |
217 |
tgttctactttgaacccatgttcttgtatttctgtttctgttatcaaatatatcagagttgtaacatgataaaaatac----tatatgcatctttaaggt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36061985 |
tgttctactttgaacccatgttcttgtatttctgtttctgttatcaaatatatcagagttgtaacatgataaaaatactatatatatgcatctttaaggt |
36062084 |
T |
|
| Q |
313 |
taataaagtgaagaacttaagaatgttt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36062085 |
taataaagtgaagaacttaagaatgttt |
36062112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University