View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_high_17 (Length: 339)

Name: NF11515_high_17
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_high_17
NF11515_high_17
[»] scaffold0083 (1 HSPs)
scaffold0083 (22-333)||(54372-54680)
[»] chr3 (27 HSPs)
chr3 (22-333)||(9980457-9980765)
chr3 (14-285)||(9852860-9853128)
chr3 (22-333)||(10034994-10035302)
chr3 (45-333)||(10263715-10264000)
chr3 (22-285)||(10520476-10520736)
chr3 (22-333)||(10129913-10130214)
chr3 (22-285)||(9841849-9842109)
chr3 (58-277)||(10583609-10583829)
chr3 (22-227)||(10430914-10431119)
chr3 (22-238)||(10666526-10666742)
chr3 (46-242)||(10372768-10372965)
chr3 (46-242)||(10360658-10360855)
chr3 (53-228)||(11778855-11779029)
chr3 (53-228)||(11772256-11772430)
chr3 (118-240)||(10531868-10531989)
chr3 (113-238)||(10092077-10092202)
chr3 (113-238)||(10198959-10199084)
chr3 (265-333)||(10430718-10430786)
chr3 (46-238)||(10503666-10503857)
chr3 (118-238)||(10680666-10680785)
chr3 (121-210)||(10086265-10086354)
chr3 (121-210)||(10193185-10193274)
chr3 (122-210)||(11242462-11242551)
chr3 (146-192)||(8585532-8585578)
chr3 (22-96)||(10086166-10086240)
chr3 (22-96)||(10193086-10193160)
chr3 (46-84)||(10583528-10583566)
[»] chr2 (1 HSPs)
chr2 (58-192)||(26909915-26910049)
[»] chr4 (1 HSPs)
chr4 (19-210)||(17849813-17850004)
[»] chr8 (2 HSPs)
chr8 (126-210)||(44954550-44954634)
chr8 (155-192)||(11488217-11488254)


Alignment Details
Target: scaffold0083 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 333
Target Start/End: Complemental strand, 54680 - 54372
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    ||||||||||||||||| |   | ||| ||||||||||||||||||||||||||||||||||||| ||||| |||  |||| | |||  | | || ||||    
T  54680 ctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccat 54581  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  54580 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaagttg 54481  T
Q  222 tgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 321  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54480 tgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 54384  T
Q  322 gtcctatgctac 333  Q
    ||||| ||||||    
T  54383 gtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 9980457 - 9980765
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    ||||||||||||||||| |   | ||| ||||||||||||||||||||||||||||||||||||| ||||| |||  |||| | |||  | | || ||||    
T  9980457 ctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccat 9980556  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  9980557 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaagttg 9980656  T
Q  222 tgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 321  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980657 tgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 9980753  T
Q  322 gtcctatgctac 333  Q
    ||||| ||||||    
T  9980754 gtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 9852860 - 9853128
Alignment:
Q  14 catcatcactgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcg 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||   | |    
T  9852860 catcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactcactgaagagactggacatttatgg 9852959  T
Q  114 atgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | || ||||||||||||    
T  9852960 atgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagaaataaatgaccaggttacaatatgatag 9853059  T
Q  214 acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9853060 acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 10034994 - 10035302
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    ||||||||||||  ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| | |  |||    ||  |    || ||||    
T  10034994 ctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaactctgcatttggaattgcccat 10035093  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |  |||||||||||||||||||||||||    
T  10035094 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaatatgatagacaagttg 10035193  T
Q  222 tgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 321  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035194 tgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 10035290  T
Q  322 gtcctatgctac 333  Q
    ||||| ||||||    
T  10035291 gtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 45 - 333
Target Start/End: Original strand, 10263715 - 10264000
Alignment:
Q  45 atgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatc-agtcgatgtccattgttagaagaaaggtataaaag 143  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||   ||| |  ||| |||   || ||||||||||||||||||||||||||    
T  10263715 atgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaaactactcgctatcgagttt-tgcccattgttagaagaaaggtataaaag 10263813  T
Q  144 gaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttc 243  Q
    ||||||||||| |||||||||||||||||||||| |||||  ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10263814 gaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttc 10263913  T
Q  244 cacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 333  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10263914 cacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 10520476 - 10520736
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    ||||||| |||||| ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||   ||  |   ||||||||    
T  10520476 ctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagactgctcatttgggaatgtccat 10520575  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||    
T  10520576 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcatatcaataaattaccaagtcacaatatgatagacaagttg 10520675  T
Q  222 tgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 285  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  10520676 tgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 10129913 - 10130214
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    |||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||| ||||| | |  ||||   ||     |||||||||    
T  10129913 ctgaaatcacttgacttttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaactgtgcattcaaggatgtccat 10130012  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | ||      ||||| |||||||||||||||||||||    
T  10130013 tgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatat------caaaggcacaatatgatagacaagttg 10130106  T
Q  222 tgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgg 321  Q
    ||||||||||||||||||| |||  |||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10130107 tgttcccatttcaggtatgctcct-agttcctaccagaaa---gccaataatcaatcctctgtacgacacacctcttaatattttcatatcatctcatgg 10130202  T
Q  322 gtcctatgctac 333  Q
    ||||| ||||||    
T  10130203 gtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 9841849 - 9842109
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    ||||||||||||  |||||   ||||||||||||| |||||||||||||||||||||||||||||||||||  || | ||| | ||  |  |||||||||    
T  9841849 ctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtctgaacatttggggatgtccat 9841948  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||  || |||||| ||||||||||||||||||    
T  9841949 tgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaatatgatagacaagttg 9842048  T
Q  222 tgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 285  Q
    ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9842049 tgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 58 - 277
Target Start/End: Original strand, 10583609 - 10583829
Alignment:
Q  58 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 157  Q
    |||||||||||||||||||||||||||||||||||  || |||||   |||      || ||||||||||||||||||||||||||||| ||| ||||||    
T  10583609 gagtcattaccagaagacagcctccctgactctcttgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggt 10583708  T
Q  158 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgttccacagttcctacc 256  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  10583709 ccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaatatgatagacaagttgtgttcccgttttcaggtatgttccacatttcctacc 10583808  T
Q  257 agaaaactgccaataatcaat 277  Q
    |||||||||||||||||||||    
T  10583809 agaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 10431119 - 10430914
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  ||||   || ||   ||||||||    
T  10431119 ctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgagaattagggaatgtccat 10431020  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |  |||||||||||||||||||||||||    
T  10431019 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataaatgatgaagtcacaatatgatagacaagttg 10430920  T
Q  222 tgttcc 227  Q
    ||||||    
T  10430919 tgttcc 10430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 10666526 - 10666742
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccat 121  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||| | ||      ||||||||    
T  10666526 ctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaaggaactgcacattgaggaatgtccat 10666625  T
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  10666626 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacgagttg 10666725  T
Q  222 tgttcccatttcaggta 238  Q
    ||||||  |||||||||    
T  10666726 tgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 10372965 - 10372768
Alignment:
Q  46 tgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaagga 145  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||  || |   |||| ||||||||||||||||||||||||||||    
T  10372965 tgtgaaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaagga 10372866  T
Q  146 aggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 242  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||  || || |||||||||||||||||||||||||||||  |||||||||||||    
T  10372865 aggaacattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 10360855 - 10360658
Alignment:
Q  46 tgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaagga 145  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| |||  |||||| |||  |   || ||||||||||||||||||||||||||||    
T  10360855 tgtgaaaagcttaaatcattaccagaagacagcctccctgactctcttaaggaactggacatctatgattgcccattgttagaagaaaggtataaaagga 10360756  T
Q  146 aggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 242  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||  || ||||||||||||||||||||||||||||||||  |||||||||||||    
T  10360755 aggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 11779029 - 11778855
Alignment:
Q  53 agctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaaca 152  Q
    |||| ||||||||||| |||||||||||||| |||||||| |||  ||||   ||  |  |||| ||||||||||||||||||||||||||||| |||||    
T  11779029 agcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaaca 11778930  T
Q  153 ttggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc 228  Q
    |||||||||||| |||||||||||||||||| |||||||| | ||||||||||||||| | ||||| |||||||||    
T  11778929 ttggtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaatatgaga-acaagctgtgttccc 11778855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 11772256 - 11772430
Alignment:
Q  53 agctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaaca 152  Q
    |||| ||||||||||| |||||||||||||| |||||||| |||  ||||   ||  |  |||| ||||||||||||||||||||||||||||| |||||    
T  11772256 agcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaaca 11772355  T
Q  153 ttggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc 228  Q
    |||||||||||| |||||||||||||||||| | |||||| | ||||||||||||||| | ||||| |||||||||    
T  11772356 ttggtccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaatatgaga-acaagctgtgttccc 11772430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 10531868 - 10531989
Alignment:
Q  118 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  ||||||  |  |||| ||||||||| ||||||    
T  10531868 ccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttacaatatga-agacaa 10531966  T
Q  218 gttgtgttcccatttcaggtatg 240  Q
    ||||||||||| |||||||||||    
T  10531967 gttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 238
Target Start/End: Original strand, 10092077 - 10092202
Alignment:
Q  113 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||  || ||  ||||||||||||    
T  10092077 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatcacaataaacaaccaacgcacaatatgata 10092176  T
Q  213 gacaagttgtgttcccatttcaggta 238  Q
    |||||| |||| |||  |||||||||    
T  10092177 gacaagctgtgctcctgtttcaggta 10092202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 238
Target Start/End: Original strand, 10198959 - 10199084
Alignment:
Q  113 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||  || ||  ||||||||||||    
T  10198959 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatcacaataaacaaccaacgcacaatatgata 10199058  T
Q  213 gacaagttgtgttcccatttcaggta 238  Q
    |||||| |||| |||  |||||||||    
T  10199059 gacaagctgtgctcctgtttcaggta 10199084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  265 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 10503666 - 10503857
Alignment:
Q  46 tgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtc---gatgtccattgttagaagaaaggtataaaa 142  Q
    |||||||||||  | |||||||||||||||||||| ||||| ||||| |||  ||||   |||| ||   |||| |||   |||||||||||||||||||    
T  10503666 tgtgaaaagctttactcattaccagaagacagccttcctgattctcttaagctactg---atcattcaaagatgcccaacattagaagaaaggtataaaa 10503762  T
Q  143 ggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggta 238  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| ||    ||||||||||||||  |||| | ||||||||| |||||||||    
T  10503763 ggaaggaacattggtccaaaatttctcacatccctgtcatagaaatagatggacaagtcacaatatga-ggacaggctgtgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 10680666 - 10680785
Alignment:
Q  118 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 217  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||  ||||||  |  ||||||||||||||  | |||    
T  10680666 ccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcataataataaacaagcaagtcacaatatga-ggtcaa 10680764  T
Q  218 gttgtgttcccatttcaggta 238  Q
    |||||||| || |||||||||    
T  10680765 gttgtgtttccgtttcaggta 10680785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 10086265 - 10086354
Alignment:
Q  121 ttgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||  | || |||||||||||    
T  10086265 ttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatga 10086354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 10193185 - 10193274
Alignment:
Q  121 ttgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||  | || |||||||||||    
T  10193185 ttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatga 10193274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 11242551 - 11242462
Alignment:
Q  122 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaatta-caaagtcacaatatga 210  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| ||||||||  |||||| |  ||||||| | | ||||||||||||||    
T  11242551 tgttagaagaaaggtatcaaaagcaggaacattggtccaaaatagctcacattactgtcaaaataataaatgacccaagtcacaatatga 11242462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 8585578 - 8585532
Alignment:
Q  146 aggaacattggtccaaaattgctcacatccctgtcatacaaataaat 192  Q
    |||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaat 8585532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 10086166 - 10086240
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaag 96  Q
    ||||||||||||||| | ||||  |||||||  || || |||||||| |||||| |||||||||| |||||||||    
T  10086166 ctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaag 10086240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 10193086 - 10193160
Alignment:
Q  22 ctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaag 96  Q
    ||||||||||||||| | ||||  |||||||  || || |||||||| |||||| |||||||||| |||||||||    
T  10193086 ctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaag 10193160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 10583528 - 10583566
Alignment:
Q  46 tgtgaaaagctagagtcattaccagaagacagcctccct 84  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  10583528 tgtgaaaagcttgggtcattaccagaagacagcctccct 10583566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 26909915 - 26910049
Alignment:
Q  58 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 157  Q
    |||||||||||||||||||||||||| ||||||||  |||  ||||| ||       || |||||||||||||||||||| |||||||||||||||||||    
T  26909915 gagtcattaccagaagacagcctccccgactctcttgagatgctggaaatgtcatcttgcccattgttagaagaaaggtacaaaaggaaggaacattggt 26910014  T
Q  158 ccaaaattgctcacatccctgtcatacaaataaat 192  Q
    |||||||||||||||||||||||||||||||||||    
T  26910015 ccaaaattgctcacatccctgtcatacaaataaat 26910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 17850004 - 17849813
Alignment:
Q  19 tcactgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtc 118  Q
    ||||||||||| |||||||| ||  | ||| |||  || ||||| |||||||||||||||||||||  |||||| ||| ||||||  ||  | ||||| |    
T  17850004 tcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgcc 17849905  T
Q  119 cattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 210  Q
    |  | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||||||    
T  17849904 ctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatatga 17849813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 44954634 - 44954550
Alignment:
Q  126 agaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 210  Q
    |||||||||||||| |||||||||||||||||||||||||||| | || | ||||||| ||||| ||  | ||||||||||||||    
T  44954634 agaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatatga 44954550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 11488217 - 11488254
Alignment:
Q  155 ggtccaaaattgctcacatccctgtcatacaaataaat 192  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  11488217 ggtccaaaattgctcacatccctgtcaaagaaataaat 11488254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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