View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_high_28 (Length: 251)

Name: NF11515_high_28
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_high_28
NF11515_high_28
[»] chr8 (5 HSPs)
chr8 (51-251)||(10636070-10636270)
chr8 (198-251)||(24286449-24286502)
chr8 (191-246)||(11295572-11295627)
chr8 (191-231)||(4989882-4989922)
chr8 (196-241)||(18068241-18068286)
[»] chr1 (10 HSPs)
chr1 (182-251)||(26060127-26060196)
chr1 (191-243)||(2351331-2351383)
chr1 (193-240)||(4940851-4940898)
chr1 (191-246)||(14331783-14331838)
chr1 (191-246)||(44359777-44359832)
chr1 (191-249)||(15177126-15177184)
chr1 (194-251)||(46289686-46289743)
chr1 (218-247)||(48033874-48033903)
chr1 (191-251)||(12173227-12173287)
chr1 (193-229)||(26701496-26701532)
[»] chr4 (8 HSPs)
chr4 (191-251)||(31463396-31463456)
chr4 (194-251)||(19934568-19934625)
chr4 (192-245)||(51581566-51581619)
chr4 (192-247)||(49483010-49483065)
chr4 (218-251)||(16560099-16560132)
chr4 (195-251)||(35498921-35498977)
chr4 (191-242)||(48513560-48513616)
chr4 (191-231)||(54339059-54339099)
[»] chr6 (4 HSPs)
chr6 (192-251)||(19645944-19646003)
chr6 (192-229)||(10855380-10855417)
chr6 (182-234)||(8825024-8825076)
chr6 (195-231)||(26572200-26572236)
[»] chr7 (6 HSPs)
chr7 (193-247)||(39321120-39321172)
chr7 (191-247)||(3408137-3408193)
chr7 (192-246)||(16492129-16492183)
chr7 (193-251)||(48705579-48705637)
chr7 (191-240)||(29687422-29687471)
chr7 (219-247)||(44207609-44207637)
[»] chr3 (5 HSPs)
chr3 (191-247)||(41794885-41794941)
chr3 (51-105)||(16926639-16926695)
chr3 (191-251)||(9189168-9189228)
chr3 (191-247)||(30567634-30567690)
chr3 (192-240)||(32415517-32415564)
[»] chr5 (6 HSPs)
chr5 (212-251)||(33338342-33338381)
chr5 (193-243)||(11680318-11680368)
chr5 (193-251)||(19804587-19804645)
chr5 (191-240)||(35653369-35653418)
chr5 (193-240)||(16315646-16315693)
chr5 (184-230)||(6539909-6539955)
[»] chr2 (7 HSPs)
chr2 (193-251)||(9991543-9991601)
chr2 (193-240)||(6999150-6999197)
chr2 (193-231)||(2966488-2966526)
chr2 (193-247)||(6084654-6084708)
chr2 (201-251)||(36402420-36402470)
chr2 (194-231)||(39085915-39085952)
chr2 (191-231)||(40619956-40619996)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 10636270 - 10636070
Alignment:
Q  51 tatttcgatatcttcattcacacaccactgctaacattatggtgataatcatgcaataatgattagtcttaggttacattcagttgattcttagattnnn 150  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  10636270 tatttcgatatcttcattcacacactactgctaacattatggtgataatcatgcaataatgattagtcttaggttacattcagttgattcttagattaaa 10636171  T
Q  151 nnnntcattacttatttcaacaattgtctttcattttttgatgggtcttgctaaccattgtcctca-aggcaatggttaaggtaaccaaaattagtagtt 249  Q
         |||||||||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||  || |||||||||||||| ||||||||||||||    
T  10636170 aaaaccattacttatttcaacaattgtcttt-atttttttatgggtcttgttaaccattcttctcaggggtaatggttaaggtaatcaaaattagtagtt 10636072  T
Q  250 tt 251  Q
    ||    
T  10636071 tt 10636070  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 24286449 - 24286502
Alignment:
Q  198 ttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    |||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  24286449 ttgctaaccagtgccctcaaggcaatggttacggtaaccaaaattagtagtttt 24286502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 11295627 - 11295572
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagta 246  Q
    ||||||||||||||||| || ||||| | |||||||||||| ||||||||||||||    
T  11295627 atgggtcttgctaaccagtgccctcatgacaatggttaaggaaaccaaaattagta 11295572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 4989882 - 4989922
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaagg 231  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  4989882 atgggtcttgctaaccattgccctcatggcaatggttaagg 4989922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 18068241 - 18068286
Alignment:
Q  196 tcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaat 241  Q
    ||||||||||||||| ||||| | |||||||||||| |||||||||    
T  18068241 tcttgctaaccattgccctcaggacaatggttaaggaaaccaaaat 18068286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 26060127 - 26060196
Alignment:
Q  182 cattttttgatgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    |||||||||| ||||||||||||| |||  ||||| ||||||||||||||||||||||||||||||||||    
T  26060127 cattttttgaagggtcttgctaactatttccctcatggcaatggttaaggtaaccaaaattagtagtttt 26060196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 2351383 - 2351331
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaatta 243  Q
    ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||    
T  2351383 atgggtcttgctaaccaatgccctcagggctatggttaaggtaaccaaaatta 2351331  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 4940898 - 4940851
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaa 240  Q
    ||||||||||||||| |||||||| |||||| ||||||| ||||||||    
T  4940898 gggtcttgctaaccactgtcctcagggcaatagttaaggaaaccaaaa 4940851  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 14331783 - 14331838
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagta 246  Q
    ||||||||||||||||  || ||||| |||||||||||||| |||||||| |||||    
T  14331783 atgggtcttgctaaccggtgccctcagggcaatggttaaggaaaccaaaaatagta 14331838  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 44359832 - 44359777
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagta 246  Q
    ||||||||||||||| | || ||||| |||||||||||||| |||||||| |||||    
T  44359832 atgggtcttgctaactagtgccctcagggcaatggttaaggaaaccaaaaatagta 44359777  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 15177184 - 15177126
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtt 249  Q
    |||||||||||||||||||  ||| | | |||||||||||||||| ||||||| |||||    
T  15177184 atgggtcttgctaaccattaccctgaggacaatggttaaggtaactaaaattaatagtt 15177126  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 46289743 - 46289686
Alignment:
Q  194 ggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    |||||||||||||| || ||||||| ||| |||||||| ||| |||| ||||||||||    
T  46289743 ggtcttgctaaccagtgccctcaagacaaaggttaaggaaactaaaagtagtagtttt 46289686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 48033874 - 48033903
Alignment:
Q  218 ggcaatggttaaggtaaccaaaattagtag 247  Q
    ||||||||||||||||||||||||||||||    
T  48033874 ggcaatggttaaggtaaccaaaattagtag 48033903  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 12173287 - 12173227
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    |||||||||| |||||| || ||||| || ||||||||||| ||| |||| ||||||||||    
T  12173287 atgggtcttgttaaccagtgccctcagggtaatggttaaggaaactaaaaatagtagtttt 12173227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 26701496 - 26701532
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaa 229  Q
    |||||||||||||||||||||| | ||||||||||||    
T  26701496 gggtcttgctaaccattgtcctaagggcaatggttaa 26701532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 31463456 - 31463396
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||||| || ||||| |||||||||| |||||||||||||||||||||||    
T  31463456 atgggtcttgctaaccaatgccctcagggcaatggttgaggtaaccaaaattagtagtttt 31463396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 19934625 - 19934568
Alignment:
Q  194 ggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||    
T  19934625 ggtcttgctaaccattgccatcagggcaatggttaagataaccaaaattagtagtttt 19934568  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 51581619 - 51581566
Alignment:
Q  192 tgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagt 245  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  51581619 tgggtcttgctaaccaatgccctcagggcaatggttaaggtaaccaaaattagt 51581566  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 49483065 - 49483010
Alignment:
Q  192 tgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtag 247  Q
    |||||||||||||||| |||||||| |  |||||||||||||||||||||||||||    
T  49483065 tgggtcttgctaaccaatgtcctcaggataatggttaaggtaaccaaaattagtag 49483010  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 16560132 - 16560099
Alignment:
Q  218 ggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||||||||||||||||||||||    
T  16560132 ggcaatggttaaggtaaccaaaattagtagtttt 16560099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 35498977 - 35498921
Alignment:
Q  195 gtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||| |||||||||| |||||||||||| ||| |||| || |||||||    
T  35498977 gtcttgctaaccaatgtcctcaagacaatggttaaggaaactaaaaataatagtttt 35498921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 48513560 - 48513616
Alignment:
Q  191 atgggtcttgctaaccattgtcct-----caaggcaatggttaaggtaaccaaaatt 242  Q
    |||||||||||||||||||| |||     ||||||||||||||||| ||||||||||    
T  48513560 atgggtcttgctaaccattgcccttagggcaaggcaatggttaaggaaaccaaaatt 48513616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 54339059 - 54339099
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaagg 231  Q
    |||||||||||||||||||| |||||  |||||||||||||    
T  54339059 atgggtcttgctaaccattgccctcagagcaatggttaagg 54339099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 19645944 - 19646003
Alignment:
Q  192 tgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||    
T  19645944 tgggtcttgctaaccattgtcctcagggcaatggttaaggaaactaaaagtagtagtttt 19646003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 10855380 - 10855417
Alignment:
Q  192 tgggtcttgctaaccattgtcctcaaggcaatggttaa 229  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  10855380 tgggtcttgctaaccattgtcctgagggcaatggttaa 10855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 8825024 - 8825076
Alignment:
Q  182 cattttttgatgggtcttgctaaccattgtcctcaaggcaatggttaaggtaa 234  Q
    |||| ||| |||||||||||||||||||| | | | |||||||||||||||||    
T  8825024 cattgttttatgggtcttgctaaccattgccttgagggcaatggttaaggtaa 8825076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 26572236 - 26572200
Alignment:
Q  195 gtcttgctaaccattgtcctcaaggcaatggttaagg 231  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  26572236 gtcttgctaaccattgccctcagggcaatggttaagg 26572200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 39321120 - 39321172
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtag 247  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  39321120 gggtcttgctaaccattg--ctcagggcaatggttaaggtaaccaaaattagtag 39321172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 3408137 - 3408193
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtag 247  Q
    ||||||||||||||||||||  |||| | |||||||||||||| |||||||||||||    
T  3408137 atgggtcttgctaaccattgctctcaggacaatggttaaggtagccaaaattagtag 3408193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 16492183 - 16492129
Alignment:
Q  192 tgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagta 246  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||| |||||||||    
T  16492183 tgggtcttgctaaccattgcccttagggcaatgattaaggtaaccgaaattagta 16492129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 48705579 - 48705637
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||| || ||||| | |||||||||||| ||| |||| ||||||||||    
T  48705579 gggtcttgctaaccagtgccctcatgacaatggttaaggaaactaaaagtagtagtttt 48705637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 29687422 - 29687471
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaa 240  Q
    |||||||||||||||||||| ||||||||||||  |||||| | ||||||    
T  29687422 atgggtcttgctaaccattgccctcaaggcaatacttaaggaagccaaaa 29687471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 44207609 - 44207637
Alignment:
Q  219 gcaatggttaaggtaaccaaaattagtag 247  Q
    |||||||||||||||||||||||||||||    
T  44207609 gcaatggttaaggtaaccaaaattagtag 44207637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 41794885 - 41794941
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtag 247  Q
    |||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  41794885 atgggtctcgcttaccattgccctcagggcaatgattaaggtaaccaaaattagtag 41794941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 16926639 - 16926695
Alignment:
Q  51 tatttcgatatcttcattcacacaccactgctaacat--tatggtgataatcatgca 105  Q
    ||||| || ||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  16926639 tattttgacatcttcattcagacaccactgctaacattatatggtgataatcatgca 16926695  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 9189168 - 9189228
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||||| || |||| | |||||  |||||| |||||||| ||||||||||    
T  9189168 atgggtcttgctaaccaatgccctcgaagcaataattaaggaaaccaaaaatagtagtttt 9189228  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 30567690 - 30567634
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtag 247  Q
    |||||||||||||||||||  |||||  | ||||||||||| | |||||||||||||    
T  30567690 atgggtcttgctaaccattaccctcagagtaatggttaaggcagccaaaattagtag 30567634  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 32415517 - 32415564
Alignment:
Q  192 tgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaa 240  Q
    |||||||||||||| |||| ||||| |||||||||||||| ||||||||    
T  32415517 tgggtcttgctaactattgccctca-ggcaatggttaaggaaaccaaaa 32415564  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 33338381 - 33338342
Alignment:
Q  212 cctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  33338381 cctcaaggcaatggttaaagtaaccaaaattagtagtttt 33338342  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 11680368 - 11680318
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaatta 243  Q
    |||||||  ||||||||||||||| |||||||||||| |||||||||||||    
T  11680368 gggtcttaataaccattgtcctcacggcaatggttaaagtaaccaaaatta 11680318  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 19804645 - 19804587
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||||| |||||| |  | ||||||||||||||| |||||||||||||||    
T  19804645 gggtcttgctaaccaatgtccttagagaaatggttaaggtaactaaaattagtagtttt 19804587  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 35653418 - 35653369
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaa 240  Q
    |||||||||||||||||||| ||||| |||||||||||||| | ||||||    
T  35653418 atgggtcttgctaaccattgccctcagggcaatggttaaggaagccaaaa 35653369  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 16315693 - 16315646
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaa 240  Q
    |||||||||||||||||| ||||| |||||||||||||| | ||||||    
T  16315693 gggtcttgctaaccattgccctcagggcaatggttaaggaagccaaaa 16315646  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 6539955 - 6539909
Alignment:
Q  184 ttttttgatgggtcttgctaaccattgtcctcaaggcaatggttaag 230  Q
    |||||| ||||||||||||||||| || ||||| |||||||||||||    
T  6539955 tttttttatgggtcttgctaaccaatgccctcagggcaatggttaag 6539909  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 9991601 - 9991543
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    ||||||||||||| |||| |  || ||||||||||||||||| ||||||||||||||||    
T  9991601 gggtcttgctaactattgcctccagggcaatggttaaggtaatcaaaattagtagtttt 9991543  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 6999150 - 6999197
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaa 240  Q
    |||| ||||||||||||||||||| |||||||||||||| | ||||||    
T  6999150 gggttttgctaaccattgtcctcagggcaatggttaaggaagccaaaa 6999197  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 2966488 - 2966526
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaagg 231  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  2966488 gggtcttgctaatcattgtcctcagggcaatggttaagg 2966526  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 6084654 - 6084708
Alignment:
Q  193 gggtcttgctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtag 247  Q
    |||||| ||||||||||| ||||| | ||||| |||||||||| |||||||||||    
T  6084654 gggtctcgctaaccattgccctcaggacaatgattaaggtaactaaaattagtag 6084708  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 36402420 - 36402470
Alignment:
Q  201 ctaaccattgtcctcaaggcaatggttaaggtaaccaaaattagtagtttt 251  Q
    |||||||||  ||||  ||||||| ||||||||||||||||||||||||||    
T  36402420 ctaaccattaccctctgggcaatgattaaggtaaccaaaattagtagtttt 36402470  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 39085952 - 39085915
Alignment:
Q  194 ggtcttgctaaccattgtcctcaaggcaatggttaagg 231  Q
    |||||||||||||||||||||||  |||||||||||||    
T  39085952 ggtcttgctaaccattgtcctcagagcaatggttaagg 39085915  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 40619996 - 40619956
Alignment:
Q  191 atgggtcttgctaaccattgtcctcaaggcaatggttaagg 231  Q
    |||||||||| ||||||||||||| | ||||||||||||||    
T  40619996 atgggtcttgttaaccattgtccttagggcaatggttaagg 40619956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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