View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11515_high_29 (Length: 249)
Name: NF11515_high_29
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_high_29 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 25335853 - 25336088
Alignment:
| Q |
13 |
agatgtatggtgtgggtcatgcatggaaacattacttgttttataaatctcagagaaataaatacattatattatgccatcttatannnnnnnnnaaaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |
|
|
| T |
25335853 |
agatgtatggtgtgggtcatgcatggaaacattacttgttttataaatctcagagaaataaatacattatattatgtcatcttatatttttttttaa-ga |
25335951 |
T |
|
| Q |
113 |
ggccaaatgtgatatatattaacttatatcatcttatattgaaacttattaacagaaataatttgaatgtgccaactaattatcattttcagacggtaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25335952 |
ggccaaatgtgatatatattaacttatatcatcttatattgaaacttattaacagaaataatttgaatgtgccaactaattatcattttcagacggtaaa |
25336051 |
T |
|
| Q |
213 |
caaattctcactcattcctcaaaagtgatagaattgt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25336052 |
caaattctcactcattcctcaaaagtgatagaattgt |
25336088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University