View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_high_30 (Length: 245)

Name: NF11515_high_30
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_high_30
NF11515_high_30
[»] chr5 (30 HSPs)
chr5 (1-113)||(2618109-2618217)
chr5 (116-207)||(8323879-8323970)
chr5 (114-241)||(26534635-26534762)
chr5 (114-241)||(791592-791719)
chr5 (114-241)||(130385-130512)
chr5 (114-206)||(33377820-33377912)
chr5 (117-207)||(42630878-42630968)
chr5 (114-206)||(5146675-5146767)
chr5 (113-206)||(13823320-13823413)
chr5 (114-191)||(26534506-26534583)
chr5 (114-205)||(6518203-6518294)
chr5 (114-205)||(8489123-8489214)
chr5 (114-205)||(19898927-19899018)
chr5 (114-191)||(130254-130331)
chr5 (114-191)||(8323707-8323784)
chr5 (113-206)||(228716-228809)
chr5 (117-205)||(35454623-35454710)
chr5 (114-191)||(42630711-42630788)
chr5 (114-205)||(40881792-40881881)
chr5 (114-183)||(14388515-14388583)
chr5 (114-183)||(35454451-35454519)
chr5 (114-182)||(14069861-14069928)
chr5 (112-182)||(5146502-5146571)
chr5 (117-183)||(19897228-19897293)
chr5 (131-205)||(40881992-40882066)
chr5 (114-171)||(791810-791867)
chr5 (114-198)||(13823150-13823233)
chr5 (114-177)||(6518404-6518466)
chr5 (129-202)||(27319643-27319716)
chr5 (117-175)||(228987-229044)
[»] chr6 (8 HSPs)
chr6 (115-207)||(33022339-33022431)
chr6 (113-206)||(21389020-21389113)
chr6 (114-191)||(33022164-33022241)
chr6 (115-206)||(7789842-7789933)
chr6 (117-183)||(21389217-21389282)
chr6 (125-196)||(7789678-7789748)
chr6 (115-204)||(28472535-28472624)
chr6 (115-204)||(29859723-29859813)
[»] chr4 (13 HSPs)
chr4 (112-241)||(40534100-40534229)
chr4 (114-241)||(3102677-3102804)
chr4 (114-191)||(3102540-3102617)
chr4 (115-191)||(13690216-13690292)
chr4 (114-205)||(18936850-18936941)
chr4 (114-205)||(37177799-37177890)
chr4 (114-191)||(9231580-9231657)
chr4 (114-191)||(40533963-40534040)
chr4 (133-241)||(9231717-9231825)
chr4 (114-183)||(11147014-11147083)
chr4 (114-199)||(18381488-18381573)
chr4 (114-180)||(5121005-5121071)
chr4 (114-194)||(18936676-18936755)
[»] chr1 (25 HSPs)
chr1 (114-241)||(10227712-10227839)
chr1 (114-241)||(26552129-26552256)
chr1 (114-205)||(23346419-23346510)
chr1 (114-205)||(48871410-48871501)
chr1 (118-191)||(19059378-19059451)
chr1 (114-206)||(50892963-50893055)
chr1 (114-205)||(28217692-28217783)
chr1 (123-207)||(19059549-19059633)
chr1 (115-206)||(39669230-39669321)
chr1 (114-180)||(10227910-10227976)
chr1 (114-206)||(41833874-41833966)
chr1 (116-191)||(26551992-26552067)
chr1 (113-183)||(48752589-48752658)
chr1 (115-201)||(50904992-50905080)
chr1 (141-205)||(7062034-7062098)
chr1 (113-180)||(48871246-48871312)
chr1 (113-180)||(50893161-50893227)
chr1 (114-183)||(28217530-28217598)
chr1 (114-183)||(42180571-42180639)
chr1 (114-183)||(4156892-4156960)
chr1 (114-183)||(7062192-7062260)
chr1 (114-183)||(41834071-41834139)
chr1 (115-183)||(50905107-50905175)
chr1 (113-206)||(42180744-42180835)
chr1 (123-179)||(23346620-23346675)
[»] chr3 (13 HSPs)
chr3 (114-207)||(27073079-27073172)
chr3 (114-207)||(33214443-33214536)
chr3 (114-207)||(36274120-36274212)
chr3 (114-206)||(36635410-36635502)
chr3 (114-205)||(19580483-19580574)
chr3 (114-191)||(33214626-33214703)
chr3 (116-191)||(10598810-10598885)
chr3 (114-191)||(33219072-33219149)
chr3 (114-191)||(36274312-36274389)
chr3 (114-176)||(10599000-10599062)
chr3 (114-175)||(27072913-27072974)
chr3 (114-205)||(11651000-11651091)
chr3 (117-182)||(36635241-36635305)
[»] chr8 (14 HSPs)
chr8 (113-241)||(37994845-37994973)
chr8 (114-205)||(41539770-41539861)
chr8 (114-206)||(2814416-2814508)
chr8 (114-206)||(397177-397269)
chr8 (114-191)||(37994708-37994785)
chr8 (114-191)||(44036814-44036891)
chr8 (114-194)||(14193509-14193588)
chr8 (114-186)||(41539963-41540034)
chr8 (114-191)||(2814243-2814319)
chr8 (114-205)||(14193324-14193414)
chr8 (130-207)||(25101746-25101823)
chr8 (114-191)||(397007-397083)
chr8 (170-207)||(44036985-44037022)
chr8 (114-177)||(40587991-40588054)
[»] chr2 (22 HSPs)
chr2 (114-241)||(31860222-31860349)
chr2 (114-241)||(42028578-42028705)
chr2 (114-207)||(13280006-13280099)
chr2 (114-207)||(2059655-2059748)
chr2 (114-207)||(16115046-16115139)
chr2 (114-207)||(7317806-7317899)
chr2 (114-187)||(36059278-36059351)
chr2 (114-191)||(42028765-42028842)
chr2 (114-206)||(31470587-31470678)
chr2 (114-196)||(15332844-15332926)
chr2 (114-183)||(31860079-31860148)
chr2 (113-205)||(38086140-38086232)
chr2 (114-191)||(7317635-7317712)
chr2 (113-186)||(38085966-38086038)
chr2 (112-191)||(2059488-2059567)
chr2 (115-180)||(3671822-3671886)
chr2 (114-175)||(13279840-13279901)
chr2 (114-191)||(16115231-16115308)
chr2 (113-205)||(3671996-3672088)
chr2 (112-171)||(15330447-15330505)
chr2 (113-180)||(31470776-31470842)
chr2 (114-143)||(36059248-36059277)
[»] chr7 (10 HSPs)
chr7 (114-206)||(7298635-7298727)
chr7 (114-206)||(40521188-40521280)
chr7 (114-207)||(19805585-19805678)
chr7 (114-191)||(19804797-19804874)
chr7 (114-183)||(40521016-40521084)
chr7 (114-182)||(7298833-7298900)
chr7 (113-183)||(28949001-28949070)
chr7 (117-183)||(46567960-46568025)
chr7 (114-183)||(16979613-16979681)
chr7 (140-206)||(46568130-46568196)
[»] scaffold0214 (2 HSPs)
scaffold0214 (118-207)||(11630-11719)
scaffold0214 (114-191)||(11814-11891)
[»] scaffold0135 (2 HSPs)
scaffold0135 (114-191)||(37446-37523)
scaffold0135 (133-241)||(37583-37691)
[»] scaffold0140 (2 HSPs)
scaffold0140 (114-182)||(15847-15915)
scaffold0140 (116-145)||(16045-16074)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2618217 - 2618109
Alignment:
Q  1 tcatgtactgaaagtgtctcaataccaatatttttatgataattattatttttgtggggggactcaaacttaaatgagagaggctttaaactaagctttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618217 tcatgtactgaaagtgtctcaataccaatatttttatgataattatt----ttgtggggggactcaaacttaaatgagagaggctttaaactaagctttt 2618122  T
Q  101 gattttgagtgtg 113  Q
    |||||||||||||    
T  2618121 gattttgagtgtg 2618109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 8323970 - 8323879
Alignment:
Q  116 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 8323879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 26534762 - 26534635
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 26534663  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     ||||| |||||||||||  ||||||||    
T  26534662 ataaatcaactagtcctttctctctctc 26534635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 791592 - 791719
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 791691  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     |||||||||||||||||  ||||||||    
T  791692 ataaattaactagtcctttctctctctc 791719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 130512 - 130385
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattataaaaaa 130413  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     ||||| |||||||||||  ||||||||    
T  130412 ataaatcaactagtcctttctctctctc 130385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 33377912 - 33377820
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 33377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 42630968 - 42630878
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattat 42630878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 5146767 - 5146675
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 5146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 13823413 - 13823320
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13823413 ggagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta 13823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 26534506 - 26534583
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 6518203 - 6518294
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||| ||||||| |||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatt 6518294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 8489123 - 8489214
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt 8489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 19899018 - 19898927
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 130254 - 130331
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 8323707 - 8323784
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt 8323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 228716 - 228809
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||  ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  228716 ggagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataatta 228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 35454710 - 35454623
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||  || |||||||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatt 35454623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 42630711 - 42630788
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| || |||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt 42630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 40881792 - 40881881
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    |||||||| |||||||||||||||||||||||   || ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaacatt--attcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 40881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 14388583 - 14388515
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 35454451 - 35454519
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 35454519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 14069861 - 14069928
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt 182  Q
    |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 5146502 - 5146571
Alignment:
Q  112 tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt 182  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  5146502 tggagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt 5146571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 19897228 - 19897293
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 19897293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 40882066 - 40881992
Alignment:
Q  131 gaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||||  ||||||| |||||||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatt 40881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaa 171  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 13823150 - 13823233
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaa 198  Q
    |||||||||||||||||||||||||||||| |||||| | || |||||| ||| |||||||||||||||  || |||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaac-tatcattcgtataaacaataaactaaaacatgacacgtattttttttcttttaa 13823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 6518466 - 6518404
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatga 177  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatga 6518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 27319716 - 27319643
Alignment:
Q  129 aggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaata 202  Q
    |||||| || |||||||||||| ||||||||||||||||||||| |||| || || ||||||| ||||||||||    
T  27319716 aggaaccaatctaacatatcattcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata 27319643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacat 175  Q
    ||||| |||||||| ||||||| |||| |||||| ||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 33022431 - 33022339
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33022339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 21389020 - 21389113
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  21389020 ggagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 33022164 - 33022241
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 7789933 - 7789842
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataatta 7789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 21389282 - 21389217
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 21389217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 7789678 - 7789748
Alignment:
Q  125 gtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctttt 196  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||| ||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttttttt 7789748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 28472624 - 28472535
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataat 204  Q
    ||||||| || ||||||||||||||||| |||||||  ||| ||||||||||||||| ||| ||||||  || |||||||||||||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat 28472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 29859813 - 29859723
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacg-tcgttgttttcttttaaaataat 204  Q
    ||||||| || ||||||||||||||||| |||||||  ||| ||||||||||||||| ||| ||||| |  || |||||||||||||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttcttttaaaataat 29859723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 40534229 - 40534100
Alignment:
Q  112 tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnn 211  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  40534229 tggagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaa 40534130  T
Q  212 nnntaaattaactagtccttcttctctctc 241  Q
       ||||| |||||||||||  ||||||||    
T  40534129 aattaaatcaactagtcctttctctctctc 40534100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 3102804 - 3102677
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattataaaaaa 3102705  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     ||||| |||||||||||  ||||||||    
T  3102704 ttaaatcaactagtcctttctctctctc 3102677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 3102540 - 3102617
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 13690216 - 13690292
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 18936941 - 18936850
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 18936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 37177890 - 37177799
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt 37177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 9231580 - 9231657
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 40533963 - 40534040
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 9231825 - 9231717
Alignment:
Q  133 acgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnnntaaattaactagtccttc 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||| |||||||||||     
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtccttt 9231726  T
Q  233 ttctctctc 241  Q
     ||||||||    
T  9231725 ctctctctc 9231717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 11147014 - 11147083
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 18381573 - 18381488
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaa 199  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| || ||||||| |||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 5121071 - 5121005
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 180  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 18936676 - 18936755
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctt 194  Q
    |||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||| ||||| || |||||||    
T  18936676 gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatttttttctt 18936755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 10227712 - 10227839
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 10227811  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     |||||||||||||||||  ||||||||    
T  10227812 ataaattaactagtcctttctctctctc 10227839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 26552256 - 26552129
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaa 26552157  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     ||||| |||||||||||  ||||||||    
T  26552156 ataaatcaactagtcctttctctctctc 26552129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 23346419 - 23346510
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||| |||||||||||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt 23346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 48871501 - 48871410
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||||| |||||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt 48871410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 19059378 - 19059451
Alignment:
Q  118 aattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 50892963 - 50893055
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 50893055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 28217783 - 28217692
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||| |||||||||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt 28217692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 19059633 - 19059549
Alignment:
Q  123 ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattat 19059549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 39669321 - 39669230
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataatta 39669230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 10227976 - 10227910
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 41833874 - 41833966
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||||| ||| |||||| |||| ||||||| |||||| ||||||||||||||||||||||||| || |||| ||||||||||||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataatta 41833966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 26551992 - 26552067
Alignment:
Q  116 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt 26552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 48752658 - 48752589
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  48752658 ggagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 48752589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 50904992 - 50905080
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatat--catccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaat 201  Q
    |||||||||||||||||||||||||||| ||||  |||  ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaat 50905080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 7062034 - 7062098
Alignment:
Q  141 aacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  7062034 aacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt 7062098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 48871246 - 48871312
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 180  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  48871246 ggagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacac 48871312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 50893227 - 50893161
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 180  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  50893227 ggagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacac 50893161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 28217530 - 28217598
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc 28217598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 42180571 - 42180639
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtc 42180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 4156892 - 4156960
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||||||| ||||||||| |||||| |||||||| || ||||||||||||||||||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtc 4156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 7062260 - 7062192
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtc 7062192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 41834139 - 41834071
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||||||||||||||||||| |||| || |||  |||||||||||||||||||||||||||||||    
T  41834139 gagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtc 41834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||| |||||||  |||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 42180835 - 42180744
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||||| | | |||||| |||| ||||||| ||||||||||||||| ||||||||||||| || || |||| ||||||||||||||    
T  42180835 ggagaaattcttgtat-gaaacgaatctaa-atatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataatta 42180744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 23346675 - 23346620
Alignment:
Q  123 ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgaca 179  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca 23346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 27073172 - 27073079
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 27073079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 33214443 - 33214536
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33214536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 36274120 - 36274212
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 36274212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 36635502 - 36635410
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 36635410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 19580574 - 19580483
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 33214703 - 33214626
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 10598810 - 10598885
Alignment:
Q  116 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 33219072 - 33219149
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttt 33219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 36274389 - 36274312
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    ||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 176  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 27072913 - 27072974
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacat 175  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 11651000 - 11651091
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||| |||| |  || ||||||| |||||||||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatt 11651091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 36635241 - 36635305
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt 182  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 37994973 - 37994845
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnn 212  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         
T  37994973 ggagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaa 37994874  T
Q  213 nntaaattaactagtccttcttctctctc 241  Q
      ||||| |||||||||||  ||||||||    
T  37994873 attaaatcaactagtcctttctctctctc 37994845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 41539770 - 41539861
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt 41539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 2814508 - 2814416
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta 2814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 397269 - 397177
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 37994708 - 37994785
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt 37994785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 44036814 - 44036891
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt 44036891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 14193588 - 14193509
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctt 194  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttctt 14193509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 41540034 - 41539963
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgtt 186  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 41539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 2814243 - 2814319
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgttttttt 2814319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 14193324 - 14193414
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    |||||||| |||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt 14193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 25101746 - 25101823
Alignment:
Q  130 ggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||| |||||| ||| ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattat 25101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 397007 - 397083
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||| |||||| ||| ||||    
T  397007 gagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgttgttttttt 397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 44037022 - 44036985
Alignment:
Q  170 aaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44037022 aaacatgacacgtcgttgttttcttttaaaataattat 44036985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 40588054 - 40587991
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatga 177  Q
    |||||||||| |||||||||||||  ||| |||||||  ||| ||| |||||||||||||||||    
T  40588054 gagaaattctggtgtaggaacgaatttaatatatcatttttataaataacaaattaaaacatga 40587991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 31860349 - 31860222
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattataaaaaa 31860250  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     |||||||||||||||||  ||||||||    
T  31860249 ataaattaactagtcctttctctctctc 31860222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 42028578 - 42028705
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 213  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 42028677  T
Q  214 ntaaattaactagtccttcttctctctc 241  Q
     ||||| |||||||||||  ||||||||    
T  42028678 ttaaatcaactagtcctttctctctctc 42028705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 13280099 - 13280006
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattat 13280006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 2059748 - 2059655
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 2059655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 16115046 - 16115139
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 16115139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 7317899 - 7317806
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattat 7317806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 36059351 - 36059278
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 42028842 - 42028765
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 42028765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 31470587 - 31470678
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 31470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 15332926 - 15332844
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttctttt 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttttatttt 15332844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 38086232 - 38086140
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    ||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||    
T  38086232 ggagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataatt 38086140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 7317635 - 7317712
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||| | ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt 7317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 38085966 - 38086038
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgtt 186  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  38085966 ggagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 38086038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 2059488 - 2059567
Alignment:
Q  112 tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| || |||||||    
T  2059488 tggagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt 2059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 3671822 - 3671886
Alignment:
Q  115 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 180  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 3671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacat 175  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 16115308 - 16115231
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| || |||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt 16115231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 3672088 - 3671996
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 205  Q
    |||||||||||| || ||||||||| |||| |||||||  ||||||| |||||||||||| || ||||||| ||||||| |||||||||||||    
T  3672088 ggagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatt 3671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 15330447 - 15330505
Alignment:
Q  112 tggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaa 171  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  15330447 tggagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 31470842 - 31470776
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 180  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||  |||||||    
T  31470842 ggagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacac 31470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 36059248 - 36059277
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaac 143  Q
    ||||||||||||||||||||||||||||||    
T  36059248 gagaaattcttgtgtaggaacgaacctaac 36059277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 7298635 - 7298727
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 7298727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 40521280 - 40521188
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta 40521188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 19805678 - 19805585
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattat 19805585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 19804797 - 19804874
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| ||||||||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt 19804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 40521016 - 40521084
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtc 40521084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 7298900 - 7298833
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt 182  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 28949070 - 28949001
Alignment:
Q  113 ggagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  28949070 ggagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtc 28949001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 46567960 - 46568025
Alignment:
Q  117 aaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 46568025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 16979681 - 16979613
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 183  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtc 16979613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 46568196 - 46568130
Alignment:
Q  140 taacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 206  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta 46568130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 11630 - 11719
Alignment:
Q  118 aattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 207  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattat 11719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 11891 - 11814
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 37446 - 37523
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 191  Q
    |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 37691 - 37583
Alignment:
Q  133 acgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnnntaaattaactagtccttc 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||| |||||||||||     
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtccttt 37592  T
Q  233 ttctctctc 241  Q
     ||||||||    
T  37591 ctctctctc 37583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 15847 - 15915
Alignment:
Q  114 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgt 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 16074 - 16045
Alignment:
Q  116 gaaattcttgtgtaggaacgaacctaacat 145  Q
    ||||||||||||||||||||||||||||||    
T  16074 gaaattcttgtgtaggaacgaacctaacat 16045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University