View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11515_high_31 (Length: 243)
Name: NF11515_high_31
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 44 - 227
Target Start/End: Complemental strand, 10635937 - 10635756
Alignment:
| Q |
44 |
ttattattaatttgtgtgagagtatagtgttatagtg-atctattgaaaaatgtgtgtagcgttcagagaagtacgtgttagtactaattgctcctctat |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10635937 |
ttattattaatttgtgtgag--tatagtgtcatagtggatctattgaaaaatgtgtgtagcgttcagagaagtacgtgttagtactaattgctcctctat |
10635840 |
T |
|
| Q |
143 |
actttttaccctgtaggtgagcttaaattttaacacaaaaagtgatggctgatgaagtaaattagtgatttaaatggtttgaatt |
227 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10635839 |
actttttaccctgtaggtgaactt-aattttaacacaaaaagtgatggctaatgaagtaaattagtgatttaaatggtttgaatt |
10635756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University