View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_high_5 (Length: 491)
Name: NF11515_high_5
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Original strand, 43096069 - 43096530
Alignment:
| Q |
14 |
agatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaatcaagatgacaaaaaatctccta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096069 |
agatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaatcaagatgacaaaaaatctccta |
43096168 |
T |
|
| Q |
114 |
caagccaaaaagcaaataatccaaaccaagcttcaagggtagcagtaccttcaacatctactagaggaaaagctaagacatcatcaagtccaagagttgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096169 |
caagccaaaaagcaaataatccaaaccaagcttcaagggtagcagtaccttcaacatctactagaggaaaagctaagacatcatcaagtccaagagttgg |
43096268 |
T |
|
| Q |
214 |
ttcttggggtggtgatggtgactcaaaattcacattcaacaaaaattccgaaagtaatcgtcgtcatagcattgcggtgtctccggtgaaagaggatgaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43096269 |
ttcttggggtggtgatggtgactcaaaattcacattcaacaaaaattccgaaagtaatcgtcgtcatagcattgcggtggctccggtgaaagaggatgaa |
43096368 |
T |
|
| Q |
314 |
agtcttgtaaacacacctgcaaaattttcaaaggttaaatctaacgtgcaaagtccttctgtaaagaagcagctttctttcacaacttcttcatctggtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43096369 |
agtcttgtaaacacacctgcaaaattttcaaaggttaaatctaacgtgcaaagtccttctgtaaagaagcagctttctttcacagcttcttcatctggtt |
43096468 |
T |
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| Q |
414 |
ctagaaggcactctattccaactaagatgggaatgaattctaataaaaatgttgctgctact |
475 |
Q |
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| T |
43096469 |
ctagaaggcactctattccaactaagatgggaatgaattctaataaaaatgttgctgctact |
43096530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 32726878 - 32726597
Alignment:
| Q |
14 |
agatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaa-tcaagatgacaaaaaatctcct |
112 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| || |
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| T |
32726878 |
agatcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaagtaaagatgataaaaaatcctct |
32726779 |
T |
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| Q |
113 |
acaagccaaaaagcaaataatccaaaccaagcttcaagggtagcagtaccttcaacatctactagaggaaaagctaagacatcatcaagtccaagagttg |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |
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| T |
32726778 |
acaagccaaaaagcaaataatccaaaccaagtttcaaggg---caataccttcaacatctactaaaggaaaagcaaagacatcatcaagtcaaagagttg |
32726682 |
T |
|
| Q |
213 |
gttcttggggtggtgatggtgactcaaaattcacattcaacaaaaattccgaaagtaatcgtcgtcatagcattgcggtgtctcc |
297 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |
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| T |
32726681 |
gttcttggggtggtgatggtgacacaaaaatcacattcaacaaaattaccgaaagtgatcgtcgtcatagcattgcggtgtctcc |
32726597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 44187734 - 44187457
Alignment:
| Q |
14 |
agatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaatcaagatgacaaaaaatctccta |
113 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
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| T |
44187734 |
agatcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaagccaagatgataaaaaatcctcta |
44187635 |
T |
|
| Q |
114 |
caagccaaaaagcaaataatccaaaccaagcttcaagggtagcagtaccttcaacatctactagaggaaaagctaagacatcatcaagtccaagagttgg |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||| |
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| T |
44187634 |
caagccaaaaagcaaataatccaaaccaagtttcaagg---gcagtaccttcaacatctactaaaggaaaagcaaagacatcatcaagtcaaaaagttgg |
44187538 |
T |
|
| Q |
214 |
ttcttggggtggtgatggtgactcaaaattcacattcaacaaaaattccgaaagtaatcgtcgtcatagcattgcggtgtctccggtg |
301 |
Q |
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|||||||||||||||||||||| ||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||| |
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| T |
44187537 |
ttcttggggtggtgatggtgac-------tcacattcaacaaaattaccgaaagtgattgtcgtcatagcattgcggtgtctccggtg |
44187457 |
T |
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