View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_high_9 (Length: 434)
Name: NF11515_high_9
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 424
Target Start/End: Complemental strand, 28441708 - 28441307
Alignment:
| Q |
20 |
cgtctccactgccaaaaccacccttccattcaccatggaagaagaaattccggcggaagacagattcagtgcattacccgatcaagttctaacacacatt |
119 |
Q |
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| T |
28441708 |
cgtctccactgccaaaaccacccttccattcaccatggaagaaggaattccggcggaagacagattcagtgcattacccgatcaagttctaacacacatt |
28441609 |
T |
|
| Q |
120 |
acatcttttcttccaatggaagatatttacaagatctcaaatctttcctttcgtttgtcctacttccccattcacaagttcacattcacgatcggttgtc |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || |
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| T |
28441608 |
acatcttttcttccaatggaagatattttcaagatctcaaatctttcctttcgtttgtccaatttccccattcacaagttcacattcacgatcggttctc |
28441509 |
T |
|
| Q |
220 |
attaccttacaaaggaggacttgatgaggttcacttattttgttagtttgaatctgctagcttgtttcgatggtgtatttaatcttgaaattactttcac |
319 |
Q |
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|||||||||||||||||||| || ||||||| || |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28441508 |
attaccttacaaaggaggacgtggagaggttcgctcattttgttggtatgaatcttctagcttgtttcgatggtgtatttaatcttgaaattactttcac |
28441409 |
T |
|
| Q |
320 |
acacaccttctatatggagaatttcacaccttattatatcaatctctggggcaatcttcttgtccaacgaggtgttcgagaactttctttaattcagcga |
419 |
Q |
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||||| || ||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28441408 |
acacaactgctatatggagaatttcacacc---ttatatcaaaatctggtgcaatcatctggtccaacgaggtgttcgagaactttctttaattcagcga |
28441312 |
T |
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| Q |
420 |
ttcat |
424 |
Q |
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||||| |
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| T |
28441311 |
ttcat |
28441307 |
T |
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