View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_low_1 (Length: 942)

Name: NF11515_low_1
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_low_1
NF11515_low_1
[»] chr8 (7 HSPs)
chr8 (13-203)||(39524322-39524512)
chr8 (639-925)||(39526099-39526363)
chr8 (367-538)||(39525846-39526016)
chr8 (796-925)||(39526441-39526570)
chr8 (796-925)||(39526648-39526777)
chr8 (236-370)||(39525679-39525811)
chr8 (411-478)||(41415537-41415604)
[»] chr7 (2 HSPs)
chr7 (372-406)||(41215831-41215865)
chr7 (312-360)||(41215713-41215762)
[»] chr3 (2 HSPs)
chr3 (408-478)||(4475738-4475808)
chr3 (408-478)||(42740929-42740999)
[»] chr2 (1 HSPs)
chr2 (408-478)||(42970595-42970665)
[»] chr5 (1 HSPs)
chr5 (407-478)||(33694437-33694508)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 4e-96; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 39524322 - 39524512
Alignment:
Q  13 gcagagacgccatttttagggttttaggagaaggaacgtgaagaaggttggaagggatggtaacaatcgttacaaaggggttttagttttggaatagact 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  39524322 gcagagacgccatttttagggttttaggagaaggaacgtgaagaaggttggaagggatgggaacaatcgttacaaaggagttttagttttggaatagact 39524421  T
Q  113 tgcctacagtaccatacacacagttcttactgttcccctatcacagcaacaagccacgtgtattaaaattctctctcttgcgtaggtttaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39524422 tgcctacagtaccatacacacagttcttactgttcccctatcacaacaacaagccacgtgtattaaaattctctctcttgcgtaggtttaa 39524512  T

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Target: chr8; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 639 - 925
Target Start/End: Original strand, 39526099 - 39526363
Alignment:
Q  639 ttatgtgtttgatttagatcaaagactatatgcctcatacacaccagcaggtcgagaaataagtatgatgatagaagatgaagannnnnnnnnnnnntgt 738  Q
    |||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||             |||    
T  39526099 ttatgtttttgatttagatcaaagactatgt--ctcatacacaccagcaggtcgagaaataagtatgataatagaagatgaagaggggggg------tgt 39526190  T
Q  739 ttcaatcaagaggaagatctttgttccgcacactattttcttctttgttcatatgtttttgttcacaaatataaggatttaatcactttaaccaccagct 838  Q
    |||||||||||||||||||||||||| || |||||||||||||||||              |||||||||||||||||||||||||||||||||||||||    
T  39526191 ttcaatcaagaggaagatctttgttctgcgcactattttcttctttg--------------ttcacaaatataaggatttaatcactttaaccaccagct 39526276  T
Q  839 ctctttgaagcaagaaacacaatgaagaaagaagatgatatttatacaatgcaaataaacacatcatcttgcttctcatttcattaa 925  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526277 ctctttgaagcaagaaacacaatgaagaaagaagatgatatttatacaatgcaaataaacacatcatcttgcttctcatttcattaa 39526363  T

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Target: chr8; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 367 - 538
Target Start/End: Original strand, 39525846 - 39526016
Alignment:
Q  367 aagttggttccttccaaccctttctttgtgttcccttcttttaggggtggataaacggtcggtttcagtcgggggtggaccagaactgccaatccgatca 466  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||    
T  39525846 aagtcggttccttccaaccctttctttgtgttcccttcttttaggggtggataaacggtcggtttcggtcgacggtgaaccagaactgccaatccgatca 39525945  T
Q  467 aacccacggttgcacaatcaaggcccaatctcgttcgttcatgtactcggttatcggtttggacaggtgacg 538  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||    
T  39525946 aacccacggttgcacaatcaagg-ccaatcccgttcgttcatgtacttggttatcggtttggacgggtgacg 39526016  T

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Target: chr8; HSP #4
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 796 - 925
Target Start/End: Original strand, 39526441 - 39526570
Alignment:
Q  796 tttgttcacaaatataaggatttaatcactttaaccaccagctctctttgaagcaagaaacacaatgaagaaagaagatgatatttatacaatgcaaata 895  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526441 tttgttcacaaatataaggatttaatcactttaaccaccagctctctttgaagcaagaaacacaatgaagaaagaagatgatatttatacaatgcaaata 39526540  T
Q  896 aacacatcatcttgcttctcatttcattaa 925  Q
    ||||||||||||||||||||||||||||||    
T  39526541 aacacatcatcttgcttctcatttcattaa 39526570  T

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Target: chr8; HSP #5
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 796 - 925
Target Start/End: Original strand, 39526648 - 39526777
Alignment:
Q  796 tttgttcacaaatataaggatttaatcactttaaccaccagctctctttgaagcaagaaacacaatgaagaaagaagatgatatttatacaatgcaaata 895  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526648 tttgttcacaaatataaggatttaatcactttaaccaccagctctctttgaagcaagaaacacaatgaagaaagaagatgatatttatacaatgcaaata 39526747  T
Q  896 aacacatcatcttgcttctcatttcattaa 925  Q
    ||||||||||||||||||||||||||||||    
T  39526748 aacacatcatcttgcttctcatttcattaa 39526777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 39525679 - 39525811
Alignment:
Q  236 ggttaaaccgttataaaacctacgagaatcaaataaaattgaaaaatctatgagaaatcgggaaatgaaaagctaggagaatggttgtttacgggagttt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39525679 ggttaaaccgttataaaacctacgagaatcaaataaaattgaaaaatct--gagaaatcgggaagtgaaaagctaggagaatggttgtttacgggagttt 39525776  T
Q  336 tggaggatcgatgtttgtgatgattcgtctgaagt 370  Q
    |||||||| |||||||||||||||| |||||||||    
T  39525777 tggaggattgatgtttgtgatgatttgtctgaagt 39525811  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 41415604 - 41415537
Alignment:
Q  411 gggtggataaacggtcggtttcagtcgggggtggaccagaactgccaatccgatcaaacccacggttg 478  Q
    ||||||| |||||||||||||| ||||| |  |||||  || |||||||||| |||||||||||||||    
T  41415604 gggtggacaaacggtcggtttcggtcggtgacggaccgaaaatgccaatccgttcaaacccacggttg 41415537  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 41215831 - 41215865
Alignment:
Q  372 ggttccttccaaccctttctttgtgttcccttctt 406  Q
    |||||||||||||||||||||||||||||||||||    
T  41215831 ggttccttccaaccctttctttgtgttcccttctt 41215865  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 41215713 - 41215762
Alignment:
Q  312 gagaatggttgtttacgggagttttggagga-tcgatgtttgtgatgatt 360  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  41215713 gagaatggttgcttacgggagttttggaggatttgatgtttgtgatgatt 41215762  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 4475738 - 4475808
Alignment:
Q  408 taggggtggataaacggtcggtttcagtcgggggtggaccagaactgccaatccgatcaaacccacggttg 478  Q
    |||||||||| |||||||||||||| ||||| |  |||||  || |||||||||| |||||||||||||||    
T  4475738 taggggtggacaaacggtcggtttcggtcggcgacggaccgaaaatgccaatccgttcaaacccacggttg 4475808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 42740999 - 42740929
Alignment:
Q  408 taggggtggataaacggtcggtttcagtcgggggtggaccagaactgccaatccgatcaaacccacggttg 478  Q
    |||||||||| |||||||||||||| |||||    |||||  || |||||||||| |||||||||||||||    
T  42740999 taggggtggacaaacggtcggtttcggtcggcaacggaccgaaaatgccaatccgttcaaacccacggttg 42740929  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 42970665 - 42970595
Alignment:
Q  408 taggggtggataaacggtcggtttcagtcgggggtggaccagaactgccaatccgatcaaacccacggttg 478  Q
    |||||||||| |||||||||||||| ||||| |  |||||  || |||||||||| |||||||||||||||    
T  42970665 taggggtggacaaacggtcggtttcggtcggcgacggaccgaaaatgccaatccgttcaaacccacggttg 42970595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 478
Target Start/End: Complemental strand, 33694508 - 33694437
Alignment:
Q  407 ttaggggtggataaacggtcggtttcagtcgggggtggaccagaactgccaatccgatcaaacccacggttg 478  Q
    ||||||||||| |||||||||||||| |||||    |||||  || |||||||||| |||||||||||||||    
T  33694508 ttaggggtggacaaacggtcggtttcggtcggcaacggaccgaaaatgccaatccgttcaaacccacggttg 33694437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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