View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_10 (Length: 460)
Name: NF11515_low_10
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 42668048 - 42668262
Alignment:
| Q |
15 |
agatgaacgcaagtgcaattactagaaggactatgataacagtgccggagctgaggaaaagtgagtatgagcgactgaggcggcggcggttggtgccact |
114 |
Q |
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| T |
42668048 |
agatgaacgcaagtgcaattactagaaggactatgataacagtgccggagctgaggaaaagtgagtatgagcgactgaggcggcggcggttggtgccgct |
42668147 |
T |
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| Q |
115 |
gttttgcagccagaagggtgaagaaatttgttcctcttcttccatttagttttggtttgatgccaaatggttgatgttttgaaacttggtgtggaagaaa |
214 |
Q |
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| T |
42668148 |
gttttgcagccagaagggtgaagaaatttgttcctcttcttccatttagttttggtttaatgccaaatggttgatgttttgaaacttggtgtggaagaaa |
42668247 |
T |
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| Q |
215 |
atatgatcttcaatt |
229 |
Q |
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| T |
42668248 |
atatgatcttcaatt |
42668262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 228 - 446
Target Start/End: Original strand, 42668288 - 42668503
Alignment:
| Q |
228 |
ttgctttggttttgttctgttctgttttttgtgctatttggttgcttatatagtgtggaatgtggatggcatgattannnnnnngggcacaatgatggct |
327 |
Q |
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| T |
42668288 |
ttgctttggtttttttttgttctgttttttgtgctctttggttgcttatatagtgtggaatgtggatggcatgattatttttttgggcacaatgatggct |
42668387 |
T |
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| Q |
328 |
tgattatttaatataataaagtaatataatgtgtttgccannnnnnnnnnnaaattatatttatttagacaagnnnnnnnctttgtataaatcaattaat |
427 |
Q |
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| T |
42668388 |
tgattatttaatataataaagtaatataatgtgtttgcca---ttttttttaaattatatttatttagacaagtttttttctttgtataaatcaattaat |
42668484 |
T |
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| Q |
428 |
tgatgagattggtgaatgg |
446 |
Q |
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| T |
42668485 |
tgatgagattggtgaatgg |
42668503 |
T |
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