View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_low_13 (Length: 417)

Name: NF11515_low_13
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_low_13
NF11515_low_13
[»] chr8 (8 HSPs)
chr8 (10-251)||(9633444-9633682)
chr8 (310-406)||(9633741-9633837)
chr8 (43-210)||(11137157-11137332)
chr8 (113-157)||(2999735-2999779)
chr8 (126-157)||(3772383-3772414)
chr8 (183-251)||(7597705-7597775)
chr8 (163-250)||(3303660-3303747)
chr8 (119-155)||(4283717-4283753)
[»] chr4 (17 HSPs)
chr4 (69-225)||(3786079-3786242)
chr4 (129-251)||(34112908-34113034)
chr4 (159-244)||(38811175-38811260)
chr4 (121-160)||(33990034-33990073)
chr4 (121-207)||(26699382-26699474)
chr4 (126-207)||(12073528-12073615)
chr4 (129-207)||(22882703-22882784)
chr4 (129-207)||(22934367-22934448)
chr4 (68-155)||(6199754-6199842)
chr4 (71-135)||(20250558-20250622)
chr4 (126-196)||(27416911-27416987)
chr4 (119-157)||(32091633-32091671)
chr4 (119-196)||(40632591-40632674)
chr4 (169-210)||(21703830-21703871)
chr4 (154-207)||(50262680-50262733)
chr4 (119-155)||(41639619-41639655)
chr4 (119-155)||(54883215-54883251)
[»] chr1 (12 HSPs)
chr1 (43-226)||(12318385-12318575)
chr1 (87-248)||(2926602-2926772)
chr1 (49-211)||(25652216-25652385)
chr1 (56-207)||(22079453-22079605)
chr1 (154-250)||(42297954-42298052)
chr1 (56-202)||(49893482-49893635)
chr1 (159-250)||(47255325-47255417)
chr1 (130-163)||(6808639-6808672)
chr1 (126-155)||(13547035-13547064)
chr1 (126-155)||(13548946-13548975)
chr1 (135-207)||(28242440-28242518)
chr1 (173-250)||(37033070-37033149)
[»] chr5 (9 HSPs)
chr5 (43-207)||(316899-317072)
chr5 (89-251)||(10700557-10700726)
chr5 (48-155)||(10054682-10054789)
chr5 (119-251)||(30793227-30793362)
chr5 (127-226)||(30802944-30803046)
chr5 (162-224)||(14689415-14689477)
chr5 (97-155)||(33905940-33905998)
chr5 (157-207)||(33906012-33906062)
chr5 (119-155)||(27015715-27015751)
[»] chr3 (10 HSPs)
chr3 (48-157)||(20937849-20937958)
chr3 (119-250)||(55301910-55302049)
chr3 (105-251)||(1683566-1683718)
chr3 (162-207)||(26323058-26323103)
chr3 (62-157)||(5270564-5270659)
chr3 (169-244)||(4055758-4055834)
chr3 (56-150)||(35138577-35138671)
chr3 (126-160)||(36019037-36019071)
chr3 (97-152)||(36796881-36796937)
chr3 (113-157)||(43401729-43401773)
[»] chr2 (5 HSPs)
chr2 (113-207)||(33648308-33648408)
chr2 (154-251)||(24398148-24398247)
chr2 (126-157)||(30217990-30218021)
chr2 (119-153)||(7451314-7451348)
chr2 (119-155)||(35446823-35446859)
[»] chr7 (5 HSPs)
chr7 (119-207)||(22328328-22328422)
chr7 (41-157)||(43363328-43363445)
chr7 (126-250)||(8359261-8359393)
chr7 (56-157)||(1360048-1360149)
chr7 (119-155)||(4508645-4508681)
[»] scaffold0197 (1 HSPs)
scaffold0197 (79-226)||(1294-1447)
[»] scaffold0236 (1 HSPs)
scaffold0236 (54-250)||(10580-10783)
[»] chr6 (1 HSPs)
chr6 (134-210)||(5043760-5043842)
[»] scaffold0466 (1 HSPs)
scaffold0466 (119-155)||(7520-7556)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 9633444 - 9633682
Alignment:
Q  10 tatttttctcttgtatttaggatcggagggagtaacccataatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  9633444 tatttttctcttgtatttaggatcggagggagtaacccataatcaaaataatcacaagcaacaa-gacaaatctagatctaatataacaatcaattgtaa 9633542  T
Q  110 aataaaattacaattgaaccaaagaataaacaagataaagagagtagaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactat 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9633543 aataaaatcacaattgaaccaaagaataaacaagataaagagagtagaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactat 9633642  T
Q  210 gtggaagagagatctcttcactccacgatcaatgaattcttt 251  Q
    ||||||||||||  ||||||||||||||| ||||||||||||    
T  9633643 gtggaagagaga--tcttcactccacgataaatgaattcttt 9633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 9633741 - 9633837
Alignment:
Q  310 ccaatatctacacattttcaatctcatgtttacaattgtttcccaacccccaaaagtaaccaacccttagcatttgatcttctcttttggtttccta 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9633741 ccaatatctacacattttcaatctcatgtttacaattgtttcccaacccccaaaagtaaccaacccttagcatttgatcttctcgtttggtttccta 9633837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 11137332 - 11137157
Alignment:
Q  43 aacccataatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaa 142  Q
    |||| ||||||||||||| ||||||||||||  ||| |||||  |||||| || ||||||| | ||||  ||||  ||||| ||||||| ||||||||||    
T  11137332 aaccgataatcaaaataaccacaagcaacaataacatatctaaatctaatctagcaatcaagtataaagaaaaaccacaatcgaaccaatgaataaacaa 11137233  T
Q  143 gataaagagagtag-------aaaacaacaccaaagaattgttta-cacagttcggtccaacaatgacctactatg 210  Q
    ||||||||||||||       ||||||||| ||||||||| |||| |  |||||||||||||||||||||||||||    
T  11137232 gataaagagagtagagaaaacaaaacaacatcaaagaattctttaccttagttcggtccaacaatgacctactatg 11137157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 2999735 - 2999779
Alignment:
Q  113 aaaattacaattgaaccaaagaataaacaagataaagagagtaga 157  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||    
T  2999735 aaaatcacaatctaaccaaagaataaacaagataaagagagtaga 2999779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 3772414 - 3772383
Alignment:
Q  126 aaccaaagaataaacaagataaagagagtaga 157  Q
    ||||||||||||||||||||||||||||||||    
T  3772414 aaccaaagaataaacaagataaagagagtaga 3772383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 7597775 - 7597705
Alignment:
Q  183 cagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattcttt 251  Q
    |||||||||| ||||||||||||||||| || |||||  ||||||| || ||||| ||||||| |||||||    
T  7597775 cagttcggtctaacaatgacctactatgggggagagattgatctctccaatccactatcaatgcattcttt 7597705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 3303660 - 3303747
Alignment:
Q  163 acaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattctt 250  Q
    |||||||||| |||||||| ||||||||||||||  ||||||||| || || |||||  |||||||||| ||||| |||||||| |||||    
T  3303660 acaccaaaga-ttgtttacccagttcggtccaac-ttgacctactgtgggggagagattgatctcttcaatccactatcaatgagttctt 3303747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 4283753 - 4283717
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4283753 acaattcaaccaaaggataaacaagataaagagagta 4283717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 3786242 - 3786079
Alignment:
Q  69 aacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagt-------agaaaac 161  Q
    |||||| ||| |||||| ||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||       ||| |||    
T  3786242 aacaacaacatatctagatctaatatagcaaccaagtgtaaaacaaaattacaatcgaaccaaagaatgaacaagataaagagagtagagaaaagagaac 3786143  T
Q  162 aacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagagagatctc 225  Q
    ||||||||| ||||||| || ||||| ||| |||||||||||||||||  || |||||||||||    
T  3786142 aacaccaaataattgttaactcagtttggtacaacaatgacctactatagggtagagagatctc 3786079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 34113034 - 34112908
Alignment:
Q  129 caaagaataaacaagataaagagagtagaaaaca----acaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagagagatct 224  Q
    ||||||||||||||||||||| ||||||| || |    |||||||| ||||||||||  | ||||||||||||||||||||||||  || ||||||||||    
T  34113034 caaagaataaacaagataaagtgagtagagaaaagagaacaccaaataattgtttaccaaattcggtccaacaatgacctactataggggagagagatct 34112935  T
Q  225 cttcactccacgatcaatgaattcttt 251  Q
    || |||| ||| |||||||| ||||||    
T  34112934 ctccacttcactatcaatgagttcttt 34112908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 38811175 - 38811260
Alignment:
Q  159 aacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagagagatctcttcactccacgatcaatga 244  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||| |  || |||||||||||| | || ||| ||||||||    
T  38811175 aacaacaccgaagaattgtttacccagttcggtccaacaatgacctactcttggggagagagatctctccgcttcactatcaatga 38811260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 33990073 - 33990034
Alignment:
Q  121 aattgaaccaaagaataaacaagataaagagagtagaaaa 160  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33990073 aattgaaccaaagaataaacaagataaagagagtagaaaa 33990034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 26699382 - 26699474
Alignment:
Q  121 aattgaaccaaagaataaacaagataaagagagt--agaaaacaacac----caaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    ||||||||||||||||||||||||||||||||||  |||||| |  ||    | ||||| | ||||| |||||||||||||||||||||||||    
T  26699382 aattgaaccaaagaataaacaagataaagagagtaaagaaaagataacggcactaagaaatttttacccagttcggtccaacaatgacctact 26699474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 12073615 - 12073528
Alignment:
Q  126 aaccaaagaataaacaagataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    |||||||||||||||||||||||||||||       ||| ||||||||| ||||| |||| ||  ||||||||||||||||||||||||    
T  12073615 aaccaaagaataaacaagataaagagagtaaagaaaagataacaacacc-aagaaatgttcacctagttcggtccaacaatgacctact 12073528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 22882703 - 22882784
Alignment:
Q  129 caaagaataaacaagataaagagagtaga----aaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    ||||||||||| ||||||||||||||| |    ||| |||||||| ||| ||||||  |||||||||||||||||||||||||    
T  22882703 caaagaataaataagataaagagagtatagaaaaaataacaccaa-gaaatgtttatccagttcggtccaacaatgacctact 22882784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 22934367 - 22934448
Alignment:
Q  129 caaagaataaacaagataaagagagtaga----aaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    ||||||||||| ||||||||||||||| |    ||| |||||||| ||| ||||||  |||||||||||||||||||||||||    
T  22934367 caaagaataaataagataaagagagtatagaaaaaataacaccaa-gaaatgtttatccagttcggtccaacaatgacctact 22934448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 6199754 - 6199842
Alignment:
Q  68 caacaacgacaaatctaggtctaatataacaatcaattgtaaaata-aaattacaattgaaccaaagaataaacaagataaagagagta 155  Q
    ||||||| |||||||||| |||||| ||||||  ||||| |||  | |||  ||||| ||||||||||| |||||||||||||||||||    
T  6199754 caacaacaacaaatctagatctaatctaacaactaattgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagta 6199842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 20250622 - 20250558
Alignment:
Q  71 caacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaa 135  Q
    |||| |||||| ||||| |||||||||||||||  |||||| ||||| ||||| |||||||||||    
T  20250622 caacaacaaatataggtataatataacaatcaagagtaaaacaaaatcacaatcgaaccaaagaa 20250558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 27416911 - 27416987
Alignment:
Q  126 aaccaaagaataaacaagataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaac 196  Q
    |||||||||||||||||||||||||||||       ||| ||||||||||||| |||||| || ||||||||||||||    
T  27416911 aaccaaagaataaacaagataaagagagtaaagacaagataacaacaccaaag-attgttgactcagttcggtccaac 27416987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 32091671 - 32091633
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagtaga 157  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  32091671 acaattgaactaaagaataaacaagataaagagcgtaga 32091633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 40632674 - 40632591
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaac 196  Q
    |||||| |||||||| ||||||||||||||||||||       ||| ||||||||| ||||| ||||||| ||||||||||||||    
T  40632674 acaattcaaccaaaggataaacaagataaagagagtaaaaaaaagataacaacacc-aagaaatgtttacccagttcggtccaac 40632591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 21703830 - 21703871
Alignment:
Q  169 aagaattgtttacacagttcggtccaacaatgacctactatg 210  Q
    ||||| ||||||| |||||||||| |||||||||||||||||    
T  21703830 aagaaatgtttacccagttcggtcaaacaatgacctactatg 21703871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 50262680 - 50262733
Alignment:
Q  154 tagaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    |||| |||||||||||   |||||| || |||||||||||||||||||||||||    
T  50262680 tagacaacaacaccaagagattgttcacccagttcggtccaacaatgacctact 50262733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 41639655 - 41639619
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||| |||||||||||||||||||||    
T  41639655 acaattcaaccaaaggataaacaagataaagagagta 41639619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 54883251 - 54883215
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||||||||| |||||||||||||||    
T  54883251 acaattcaaccaaagaataaataagataaagagagta 54883215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 226
Target Start/End: Original strand, 12318385 - 12318575
Alignment:
Q  43 aacccataatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaa 142  Q
    |||| |||| |||||||| |||| |||||||| ||| |||||| | |||  || ||| ||||||||||  ||||| | ||||||||||||||||||||||    
T  12318385 aaccaataaccaaaataagcacacgcaacaacaacagatctagatttaacctagcaaccaattgtaaagcaaaatcataattgaaccaaagaataaacaa 12318484  T
Q  143 gataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagagagatctct 226  Q
    ||||||| ||||       ||| |||||||||||| ||||||||||  |||||||||||| ||||| |||||||| || ||||||||||||    
T  12318485 gataaagggagtaaagaaaagagaacaacaccaaaaaattgtttacctagttcggtccaataatgaactactatgggggagagagatctct 12318575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 2926772 - 2926602
Alignment:
Q  87 tctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagtag-------aaaacaacaccaaagaattgttt 179  Q
    |||||| |||||||||| ||||||||||||  | |||| || ||||||||||||||||||||||||||||       | |||||||||||||||||||||    
T  2926772 tctaatctaacaatcaagtgtaaaataaaaccataattaaatcaaagaataaacaagataaagagagtagagtaaaaagaacaacaccaaagaattgttt 2926673  T
Q  180 acacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattc 248  Q
    ||  |||||||| ||||||||||||||| ||  |||||||  ||||||| || ||||| | ||||||||||    
T  2926672 acctagttcggtgcaacaatgacctactctgcagaagagattgatctctccaatccactaccaatgaattc 2926602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 25652385 - 25652216
Alignment:
Q  49 taatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaa 148  Q
    ||||||||||||||||||| |||||| |||||| ||| |||||| || |||  || ||||||  ||||  |||    ||||||| ||||||||| |||||    
T  25652385 taatcaaaataatcacaagtaacaacaacaaatttagatctaatctagcaactaagtgtaaagcaaaaccacaggcaaaccaaataataaacaaaataaa 25652286  T
Q  149 gagagtagaaaa-------caacaccaaagaattgtttacacagttcggtccaacaatgacctactatgt 211  Q
    ||||||||| ||       ||||||||||||||||||||  ||||||||| |||||||||| | ||||||    
T  25652285 gagagtagagaaaagagggcaacaccaaagaattgtttatccagttcggttcaacaatgactttctatgt 25652216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 22079605 - 22079453
Alignment:
Q  56 aataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaag-agagt 154  Q
    ||||| ||||||||||||| ||  |||||| ||||||  ||||| ||| ||||||  ||||  ||||||||| ||||||| ||  || |||||| ||||     
T  22079605 aataaccacaagcaacaacaacttatctagatctaatcaaacaaacaagtgtaaagcaaaacaacaattgaatcaaagaacaat-aacataaagtagagg 22079507  T
Q  155 agaa-aacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    | || ||||||||||||||| |||||||  |||| |||||| ||||||||||||    
T  22079506 aaaagaacaacaccaaagaaatgtttaccaagtttggtccagcaatgacctact 22079453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 42297954 - 42298052
Alignment:
Q  154 tagaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattctt 250  Q
    |||| |||||||||||   |||||| || |||||||||||||| |||||||||| ||  | |||||  |||||||||| ||||| |||||||| |||||    
T  42297954 tagacaacaacaccaagagattgttcacccagttcggtccaaccatgacctactctggaggagagattgatctcttcaatccactatcaatgagttctt 42298052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 49893482 - 49893635
Alignment:
Q  56 aataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagag-- 153  Q
    |||||||||||||| |||| ||| || ||| |||||  || ||| ||| ||||||  || || ||||| ||||||||||| || ||||||||||||||      
T  49893482 aataatcacaagcagcaacaacatatttagatctaacgtatcaaccaagtgtaaagcaatataacaatcgaaccaaagaacaatcaagataaagagagtg 49893581  T
Q  154 -----tagaaaacaacaccaaagaattgtttacacagttcggtccaacaatgac 202  Q
         |||| ||||||||||| || ||||| || |||||||| ||||| |||||    
T  49893582 gagtatagagaacaacaccaaggatttgttcacccagttcggcccaacgatgac 49893635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 47255325 - 47255417
Alignment:
Q  159 aacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattctt 250  Q
    ||||||||||| ||| |||| || ||||||||||||||||||||||||| ||  | |||||  ||||||| || ||||| |||||||| |||||    
T  47255325 aacaacaccaa-gaaatgttcacccagttcggtccaacaatgacctactctggaggagagattgatctctccaatccactatcaatgagttctt 47255417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 6808672 - 6808639
Alignment:
Q  130 aaagaataaacaagataaagagagtagaaaacaa 163  Q
    |||| |||||||||||||||||||||||||||||    
T  6808672 aaagcataaacaagataaagagagtagaaaacaa 6808639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 13547035 - 13547064
Alignment:
Q  126 aaccaaagaataaacaagataaagagagta 155  Q
    ||||||||||||||||||||||||||||||    
T  13547035 aaccaaagaataaacaagataaagagagta 13547064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 13548946 - 13548975
Alignment:
Q  126 aaccaaagaataaacaagataaagagagta 155  Q
    ||||||||||||||||||||||||||||||    
T  13548946 aaccaaagaataaacaagataaagagagta 13548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 28242518 - 28242440
Alignment:
Q  135 ataaacaagataaagagagtagaaaa-------caacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    ||||||||||||||||||||||| ||       ||||||||| ||| |||| || |||||||||||||||||||||||||    
T  28242518 ataaacaagataaagagagtagagaaaagataacaacaccaa-gaaatgttcacccagttcggtccaacaatgacctact 28242440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 37033070 - 37033149
Alignment:
Q  173 attgtttacacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattctt 250  Q
    |||||| || |||||||||||||| |||||||||||||  |||||||   |||||| || ||||| |||||||| |||||    
T  37033070 attgttcacccagttcggtccaaccatgacctactatggagaagagattaatctctccaatccactatcaatgagttctt 37033149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 317072 - 316899
Alignment:
Q  43 aacccataatcaaaataatcacaagcaacaac---gacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaa 139  Q
    |||| |||| |||||||| |||||||||||||   |||| |||||| ||| || || ||| ||| ||||||  ||||  |||||||||||||||||||||    
T  317072 aaccaataaccaaaataaccacaagcaacaacaacgacagatctagatcttatctagcaaccaagtgtaaagcaaaaccacaattgaaccaaagaataaa 316973  T
Q  140 caagataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    ||| |||||||||||       ||| ||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  316972 caaaataaagagagtagggaaaagagaacaaca-caaagaattgtttaccaagttcggtccaacaatgacctact 316899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 10700557 - 10700726
Alignment:
Q  89 taatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagtagaaaa-------caacaccaaagaattgtttac 181  Q
    |||| |||||||||| ||||||  ||||  |||||  || |||||||||| |||||||||||| ||||| ||       |||||| |||||||| |||||    
T  10700557 taatctaacaatcaagtgtaaatcaaaaccacaatcaaatcaaagaataagcaagataaagagcgtagagaaaagagaacaacacgaaagaattatttac 10700656  T
Q  182 acagttcggtccaacaatgacctactatgtggaagagagatctcttcactccacgatcaatgaattcttt 251  Q
     |||||||||  ||||||||||||||||| || |||||||||||| |||| ||| |||||||| ||||||    
T  10700657 tcagttcggtgaaacaatgacctactatgggggagagagatctctccacttcactatcaatgagttcttt 10700726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 10054682 - 10054789
Alignment:
Q  48 ataatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataa 147  Q
    ||||||||||||| |||| |||||| | |||||||||| |||||| || ||| ||| ||||||  ||||||||||| ||| |||| ||||||||||||||    
T  10054682 ataatcaaaataaccacatgcaacatcaacaaatctagatctaatctagcaaccaagtgtaaagcaaaattacaatcgaagcaaaaaataaacaagataa 10054781  T
Q  148 agagagta 155  Q
    | ||||||    
T  10054782 aaagagta 10054789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 30793362 - 30793227
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagtaga-aaac-aacac-caaagaattgtttacacagttcggtccaacaatgacctactatgtggaa 215  Q
    |||||| |||||||||||||||||||||||||||||||| |||| ||||| | ||||| |||||||   |||||||||||||||||| |||| |  || |    
T  30793362 acaattaaaccaaagaataaacaagataaagagagtagagaaacaaacacaccaagaaatgtttaccttgttcggtccaacaatgacttactctagggga 30793263  T
Q  216 gagagatctcttcactccacgatcaatgaattcttt 251  Q
    ||||||||||| |||| ||| |||||| | ||||||    
T  30793262 gagagatctctccacttcactatcaattagttcttt 30793227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 30803046 - 30802944
Alignment:
Q  127 accaaagaataaacaagataaagagagtagaaaac--aacac-caaagaattgtttacacagttcggtccaacaatgacctactatgtggaagagagatc 223  Q
    ||||||||||||||||||||||||||||||||||   ||||| |||| || |||| || | ||||||||||||||||||||| | || || |||||||||    
T  30803046 accaaagaataaacaagataaagagagtagaaaaacaaacacacaaaaaaatgttaaccctgttcggtccaacaatgacctattgtgcgggagagagatc 30802947  T
Q  224 tct 226  Q
    |||    
T  30802946 tct 30802944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 14689415 - 14689477
Alignment:
Q  162 aacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagagagatct 224  Q
    |||| |||||||||||||||  ||||| ||||||||||||| |||  || |||||||||||||    
T  14689415 aacaacaaagaattgtttacctagttcagtccaacaatgacataccctgaggaagagagatct 14689477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 33905940 - 33905998
Alignment:
Q  97 caatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagta 155  Q
    ||||||| |||||| |||||  ||| | ||||||| |||||||||||||||||||||||    
T  33905940 caatcaagtgtaaagtaaaaccacattcgaaccaatgaataaacaagataaagagagta 33905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 33906012 - 33906062
Alignment:
Q  157 aaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    |||| ||||| |||||||||||||| ||| ||||||||||| |||||||||    
T  33906012 aaaaaaacacaaaagaattgtttacccagctcggtccaacattgacctact 33906062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 27015751 - 27015715
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||| |||||||||||||||||||||    
T  27015751 acaattcaaccaaagcataaacaagataaagagagta 27015715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 20937958 - 20937849
Alignment:
Q  48 ataatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataa 147  Q
    |||| ||||||||  ||||||| |||| |||||||||| |||||| ||  |||||| |||||| |||||| ||||| |||||||| ||||||||||||||    
T  20937958 ataagcaaaataactacaagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagtaaaatcacaatcgaaccaaataataaacaagataa 20937859  T
Q  148 agagagtaga 157  Q
    ||||||||||    
T  20937858 agagagtaga 20937849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 55301910 - 55302049
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta-------gaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgt 211  Q
    |||||| |||||||| |||||||||||||||||||||       || |||||||| || ||| |||| ||  |||||||||||||||||||||||||||     
T  55301910 acaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacactaa-gaaatgttcaccaagttcggtccaacaatgacctactatgg 55302008  T
Q  212 ggaagaga--gatctcttcactccacgatcaatgaattctt 250  Q
     | |||||  ||||||| || ||||| ||||||||||||||    
T  55302009 aggagagattgatctctccaatccactatcaatgaattctt 55302049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 251
Target Start/End: Complemental strand, 1683718 - 1683566
Alignment:
Q  105 tgtaaaataaaattacaattgaaccaaagaa-taaacaagataaagagagtagaaaa------caacaccaaagaattgtttacacagttcggtccaaca 197  Q
    ||||||||||||  ||||| |||||||| || |||||||||||||||||||||| ||      |||||||||| |  ||| ||| ||  |||||| ||||    
T  1683718 tgtaaaataaaaccacaatcgaaccaaaaaaataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtac-caaatcggtctaaca 1683620  T
Q  198 atgacctactatgtggaagagagatctcttcactccacgatcaatgaattcttt 251  Q
    |||| |||||||| ||||||||||||||| |||| ||| || ||||| ||||||    
T  1683619 atgatctactatggggaagagagatctctccacttcactataaatgagttcttt 1683566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 26323058 - 26323103
Alignment:
Q  162 aacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    |||||||||||||||||||| || ||||||||||||||||||||||    
T  26323058 aacaccaaagaattgtttacccacttcggtccaacaatgacctact 26323103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 5270659 - 5270564
Alignment:
Q  62 cacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagtaga 157  Q
    ||||||||||||| | | |||||| |||||| || ||| ||| |||||   ||||  ||||| ||||||||||||||||| |||||||||||||||    
T  5270659 cacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgcaaaaccacaatcgaaccaaagaataaacatgataaagagagtaga 5270564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 4055758 - 4055834
Alignment:
Q  169 aagaattgtttacacagttcggtccaacaatgacctac-tatgtggaagagagatctcttcactccacgatcaatga 244  Q
    |||| ||| |||| |||||||| ||||||||||||||| | || || ||||||||||||||| ||||| ||||||||    
T  4055758 aagatttggttacccagttcggcccaacaatgacctacatctgggggagagagatctcttcaatccactatcaatga 4055834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 35138577 - 35138671
Alignment:
Q  56 aataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaaga 150  Q
    ||||| ||||||||||||| ||| || ||| || ||| || |||| |  ||||||| ||||  ||||| |||||||||||||||| |||||||||    
T  35138577 aataaccacaagcaacaacaacatatttagatccaatctagcaattaggtgtaaaacaaaaccacaatcgaaccaaagaataaaccagataaaga 35138671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 36019071 - 36019037
Alignment:
Q  126 aaccaaagaataaacaagataaagagagtagaaaa 160  Q
    |||||||| ||||||||||||||||||||||||||    
T  36019071 aaccaaaggataaacaagataaagagagtagaaaa 36019037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 36796937 - 36796881
Alignment:
Q  97 caatcaattgtaaaataaaattacaattgaaccaaagaataa-acaagataaagaga 152  Q
    ||||||| ||||||| ||||| ||||||||||||||||| ||  |||||||||||||    
T  36796937 caatcaagtgtaaaacaaaatcacaattgaaccaaagaacaacgcaagataaagaga 36796881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 43401729 - 43401773
Alignment:
Q  113 aaaattacaattgaaccaaagaataaacaagataaagagagtaga 157  Q
    ||||| |||||  |||||||| |||||||||||||||||||||||    
T  43401729 aaaatcacaatctaaccaaaggataaacaagataaagagagtaga 43401773  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 33648408 - 33648308
Alignment:
Q  113 aaaattacaattgaaccaaagaataaacaagataaagagagtag----aaaacaacacca--aagaattgtttacacagttcggtccaacaatgacctac 206  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||    || |||||| ||  || || ||||||| ||||||||||||||||||||||||    
T  33648408 aaaatcacaattaaactaaagaataaacaagataaagagagtagagaaaagacaacaacaccaataaatgtttacccagttcggtccaacaatgacctac 33648309  T
Q  207 t 207  Q
    |    
T  33648308 t 33648308  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 24398247 - 24398148
Alignment:
Q  154 tagaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatgaattcttt 251  Q
    |||| |||||||||||  ||||||| |  |||||||||||||||||||||||||||| || |||||  ||||||| || ||||  |||||||| ||||||    
T  24398247 tagataacaacaccaagtaattgttcagccagttcggtccaacaatgacctactatgggggagagattgatctctccaatccattatcaatgagttcttt 24398148  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 157
Target Start/End: Original strand, 30217990 - 30218021
Alignment:
Q  126 aaccaaagaataaacaagataaagagagtaga 157  Q
    ||||||||||||||||||||||||||||||||    
T  30217990 aaccaaagaataaacaagataaagagagtaga 30218021  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 7451348 - 7451314
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagag 153  Q
    ||||| |||||||||||||||||||||||||||||    
T  7451348 acaatcgaaccaaagaataaacaagataaagagag 7451314  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 35446823 - 35446859
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||| |||||||||||||||||||||    
T  35446823 acaattcaaccaaagcataaacaagataaagagagta 35446859  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 22328328 - 22328422
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctact 207  Q
    ||||| |||| |||||||||||||||||||||||||       ||| |||||||||||| || | ||||| |||||||||||||||||||||||||    
T  22328328 acaatcgaacaaaagaataaacaagataaagagagtagagaaaagataacaacaccaaa-aaatatttacccagttcggtccaacaatgacctact 22328422  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 43363328 - 43363445
Alignment:
Q  41 gtaacccataatcaaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaata-aaattacaattgaaccaaagaataaa 139  Q
    |||||| ||||  ||||| | ||||||||||||  |||||||||| |||||| ||||||  | ||| |||  | |||  ||||| ||||||||||| |||    
T  43363328 gtaaccaataactaaaatgaccacaagcaacaataacaaatctagatctaatctaacaactatttgcaaagcacaaaccacaatcgaaccaaagaacaaa 43363427  T
Q  140 caagataaagagagtaga 157  Q
    ||||||||||||||||||    
T  43363428 caagataaagagagtaga 43363445  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 8359261 - 8359393
Alignment:
Q  126 aaccaaagaataaacaagataaagagagtagaaaa-------caacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagag 218  Q
    |||||||| ||||||||||||| ||||||||| ||       ||||||||| ||| |||| || ||||||||||||||||||||||||| ||  | ||||    
T  8359261 aaccaaaggataaacaagataatgagagtagagaaaagataacaacaccaa-gaaatgttcacccagttcggtccaacaatgacctactctggaggagag 8359359  T
Q  219 a--gatctcttcactccacgatcaatgaattctt 250  Q
    |  ||||||| || ||||| |||||||| |||||    
T  8359360 attgatctctccaatccactatcaatgagttctt 8359393  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 1360048 - 1360149
Alignment:
Q  56 aataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagta 155  Q
    ||||| ||||||||||||| |||| | ||| |||||| ||| ||  || ||||||  ||||  ||||| |||| |||||| |||||||||||||||| ||    
T  1360048 aataaccacaagcaacaacaacaattttagatctaatctaaaaactaagtgtaaagcaaaaccacaatcgaacaaaagaagaaacaagataaagagaata 1360147  T
Q  156 ga 157  Q
    ||    
T  1360148 ga 1360149  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 4508645 - 4508681
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4508645 acaattcaaccaaaggataaacaagataaagagagta 4508681  T

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Target: scaffold0197 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 1294 - 1447
Alignment:
Q  79 aatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagataaagagagta-------gaaaacaacaccaaag 171  Q
    ||||||| |||||| ||  || ||| |||||| |||||  |||||  ||||||| |||||| |||||||||||||||       || || |||| |||||    
T  1294 aatctagatctaatctagaaaccaagtgtaaagtaaaaccacaatcaaaccaaaaaataaataagataaagagagtaaagagaagagaaaaacatcaaag 1393  T
Q  172 aattgtttacacagttcggtccaacaatgacctactatgtggaagagagatctct 226  Q
    |||||||||| || || ||||||||||||||||||| | ||| ||||||||||||    
T  1394 aattgtttacccaatttggtccaacaatgacctactct-tgggagagagatctct 1447  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 10783 - 10580
Alignment:
Q  54 aaaataatcacaagcaacaacgacaaatctaggtctaatataacaatcaattgtaaaataaaattacaattgaaccaaagaataaacaagat-aaagaga 152  Q
    ||||||| ||||||||||||| |||| ||||| | |||| ||  |||||| |||| | ||||| ||||||  || ||||||||||||||||| |||||||    
T  10783 aaaataaccacaagcaacaacaacaa-tctagatttaatctagaaatcaagtgtatagtaaaactacaatctaatcaaagaataaacaagataaaagaga 10685  T
Q  153 gt-------agaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatgtggaagaga--gatctcttcactccacgatcaatg 243  Q
    ||       ||| ||||||||| ||||| ||||||| ||||||||||||||  ||||||||| ||  | |||||  |||||||||| ||||| ||||| |    
T  10684 gtagaggaaagataacaacacc-aagaaatgtttacccagttcggtccaac-ttgacctactctggaggagagattgatctcttcaatccactatcaacg 10587  T
Q  244 aattctt 250  Q
    | |||||    
T  10586 agttctt 10580  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 5043842 - 5043760
Alignment:
Q  134 aataaacaagataaagagagta-------gaaaacaacaccaaagaattgtttacacagttcggtccaacaatgacctactatg 210  Q
    ||||||||||||||||||||||       || ||||||||||| ||| |||| || ||||||||||||||||||||||||||||    
T  5043842 aataaacaagataaagagagtaaagaaaagataacaacaccaa-gaaatgttcacccagttcggtccaacaatgacctactatg 5043760  T

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Target: scaffold0466 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 7556 - 7520
Alignment:
Q  119 acaattgaaccaaagaataaacaagataaagagagta 155  Q
    |||||| |||||||| |||||||||||||||||||||    
T  7556 acaattcaaccaaaggataaacaagataaagagagta 7520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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