View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_14 (Length: 408)
Name: NF11515_low_14
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_14 |
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| [»] scaffold0341 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 47689951 - 47689634
Alignment:
| Q |
9 |
aagcaaaggtaaggtcaaaggaaatattgcaacttaccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttt |
108 |
Q |
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| T |
47689951 |
aagcaaaggtaaggtcaaaggaaatattgcaacttaccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttt |
47689852 |
T |
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| Q |
109 |
tttgtaaacagaaacctagtagtttaactaaatttcgatgttgaagcttccctgtcagcaacacttcgttcttaaattctgtttctccttgcttagaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47689851 |
tttgtaaacagaaacctagtagtttaactaaatttcgatgttgaagcttccctgtcagcaacacttcgttcttaaattctgtttctccttgcttagaatt |
47689752 |
T |
|
| Q |
209 |
gttagccaatcttttgatagcaatatcttgtccatcagggagtgtaccctaaaattaattaaaatctttagatctaagaaaaatatcatgatatatgcat |
308 |
Q |
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| T |
47689751 |
gttagccaaccttttgatagcaatatcttgtccatcagggagtgtaccctaaaattaattaaaatctttagatctaagaaaaatatcatgatatatgcat |
47689652 |
T |
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| Q |
309 |
gtgtttgagtgtttcaat |
326 |
Q |
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|||||||||||||||||| |
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| T |
47689651 |
gtgtttgagtgtttcaat |
47689634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 31 - 269
Target Start/End: Complemental strand, 47678643 - 47678405
Alignment:
| Q |
31 |
aatattgcaacttaccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtag |
130 |
Q |
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| T |
47678643 |
aatattgcaacttaccaaatatgatataatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatag |
47678544 |
T |
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| Q |
131 |
tttaactaaatttcgatgttgaagcttccctgtcagcaacacttcgttcttaaattctgtttctccttgcttagaattgttagccaatcttttgatagca |
230 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
47678543 |
cttaactaaatttcgatgttgaagcttccctgtcaataacacttcgttcttaaattctgtttctccttgctcagaattgttagccaaccttttgatagca |
47678444 |
T |
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| Q |
231 |
atatcttgtccatcagggagtgtaccctaaaattaatta |
269 |
Q |
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||||| |||||||| | ||| |||||||||||||||||| |
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| T |
47678443 |
atatcatgtccatctgagagcgtaccctaaaattaatta |
47678405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 47711875 - 47711989
Alignment:
| Q |
43 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
142 |
Q |
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|||||||||| | |||||||||||||||||| | ||||| ||||| || || | |||||||||| || || ||| ||||| |||||| |||||||||| |
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| T |
47711875 |
taccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
47711974 |
T |
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| Q |
143 |
tcgatgttgaagctt |
157 |
Q |
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||||||||||||||| |
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| T |
47711975 |
tcgatgttgaagctt |
47711989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 47770783 - 47770669
Alignment:
| Q |
43 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
142 |
Q |
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|||||||||||| ||||||||||||||||| | ||||| |||||||| || |||||||| || || ||||| |||||| || ||| |||||||||| |
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| T |
47770783 |
taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatt |
47770684 |
T |
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| Q |
143 |
tcgatgttgaagctt |
157 |
Q |
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||||||||||||||| |
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| T |
47770683 |
tcgatgttgaagctt |
47770669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 47689611 - 47689571
Alignment:
| Q |
349 |
gataattattttaccttataaacagttccaaaaccaccctc |
389 |
Q |
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| T |
47689611 |
gataattattttaccttataaacagttccaaaaccaccctc |
47689571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 47716626 - 47716740
Alignment:
| Q |
43 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
142 |
Q |
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|||||||||| | |||||||||||||||||| | ||||| ||||| | || | |||||||||| || || ||| ||||| |||||| ||||||||| |
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| T |
47716626 |
taccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctagacaaaaaccaagtagtcaaactaaatt |
47716725 |
T |
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| Q |
143 |
tcgatgttgaagctt |
157 |
Q |
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||||||||||||||| |
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| T |
47716726 |
tcgatgttgaagctt |
47716740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 47744390 - 47744504
Alignment:
| Q |
43 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
142 |
Q |
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|||||||||| | |||||||||||||||||| | ||| | ||||| | || | |||||||||| || || ||| ||||| |||||| |||||||||| |
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| T |
47744390 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
47744489 |
T |
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| Q |
143 |
tcgatgttgaagctt |
157 |
Q |
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||||||||||||||| |
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| T |
47744490 |
tcgatgttgaagctt |
47744504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 47758773 - 47758887
Alignment:
| Q |
43 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
142 |
Q |
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|
|||||||||| | |||||||||||||||||| | ||| | ||||||| || | |||||||||| || | ||| ||||| |||||| ||||||||| |
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| T |
47758773 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
47758872 |
T |
|
| Q |
143 |
tcgatgttgaagctt |
157 |
Q |
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||||||||||||||| |
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| T |
47758873 |
tcgatgttgaagctt |
47758887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 47774686 - 47774580
Alignment:
| Q |
48 |
aatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgat |
147 |
Q |
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| T |
47774686 |
aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgat |
47774587 |
T |
|
| Q |
148 |
gttgaag |
154 |
Q |
| |
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||||||| |
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| T |
47774586 |
gttgaag |
47774580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 6511030 - 6511127
Alignment:
| Q |
57 |
taatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttgaag |
154 |
Q |
| |
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||||||||||||||||| ||||||||||| || ||||||||||||||| || || |||||||| |||| | | ||||||||||| |||||||| |
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| T |
6511030 |
taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag |
6511127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 6525033 - 6524972
Alignment:
| Q |
93 |
agtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttgaag |
154 |
Q |
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||||||||||||||| || || ||||||||| ||||| ||||||| |||||||||||||| |
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| T |
6525033 |
agtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaag |
6524972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 27369133 - 27369248
Alignment:
| Q |
39 |
aacttaccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaacta |
138 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||| || || ||||||||| ||||| |||||| |
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| T |
27369133 |
aacttaccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaacta |
27369232 |
T |
|
| Q |
139 |
aatttcgatgttgaag |
154 |
Q |
| |
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||||||||||||||| |
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| T |
27369233 |
gatttcgatgttgaag |
27369248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 28854962 - 28855025
Alignment:
| Q |
43 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctct |
106 |
Q |
| |
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|||||||||||| || |||||||||||||||| ||||| ||||| | ||||||||||||||| |
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| T |
28854962 |
taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctct |
28855025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 12711 - 12808
Alignment:
| Q |
57 |
taatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttgaag |
154 |
Q |
| |
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||||||||||||||||| ||||||||||| || ||||||||||||||| || || |||||||| |||| | | ||||||||||| |||||||| |
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| T |
12711 |
taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag |
12808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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