View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_16 (Length: 376)
Name: NF11515_low_16
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 40545516 - 40545851
Alignment:
| Q |
1 |
ttcatgttcatgtggagcaaatgatatattataaatgtagggttcgattataggtagcttaggtttccggcgcggccagaatttaaatattgcaaagatg |
100 |
Q |
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| T |
40545516 |
ttcatgttcatgtggagcaaatgatatattataagtgtagggttcgattataggtagcttaggtttccggcgcggccagaatttaaatattgcaaagatg |
40545615 |
T |
|
| Q |
101 |
taatgtcactgacttttattcttttaaatattctccacttaatatgatattattattatgcaaattaatttaaagtgccttccatttttaatgaaaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545616 |
taatgtcactgacttttattcttttaaatattctccacttaatatgatattattattatgcaaattaatttaaagtgccttccatttttaatgaaaatat |
40545715 |
T |
|
| Q |
201 |
gctagactttccttttgtagtgaaggtgcactagccagcattgattcaaaatatacttcaagttgcatttagtgttattgattttctaggtgtagatagg |
300 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40545716 |
gctagactttcctcttgtagtgaaggtgcactagctagcattgattcaaaatatacttcaagttgcatttagtgttattaattttctaggtgtagatagg |
40545815 |
T |
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| Q |
301 |
gaaggagacaaagagaaaaataatgtactccttttg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40545816 |
gaaggagacaaagagaaaaataatgtactccttttg |
40545851 |
T |
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