View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_18 (Length: 351)
Name: NF11515_low_18
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_18 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 40 - 345
Target Start/End: Original strand, 20220 - 20525
Alignment:
| Q |
40 |
ggagttccaagcatctctcatttatgcgagacgagtttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatca |
139 |
Q |
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| T |
20220 |
ggagttccaagcatctctcatttatgcgagacgagtttccaagtgcaagtacctctgtaacacaaacatttgtaacaacatgatcataatcaagtaatca |
20319 |
T |
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| Q |
140 |
aaaggaaaccaaaaaataactttccagattaagcaaagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcat |
239 |
Q |
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| T |
20320 |
aaaggaaaccaaaaaataactttccagattaagcaaagttccataccttgattaatacaaagatttttcctggaacctaaactcacaacacccatttcat |
20419 |
T |
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| Q |
240 |
cagcaaacactgtctttctcaactcctttacaaactgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaatttcttctcctcttcctcttc |
339 |
Q |
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|||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20420 |
cagcaaacaccgttttcctcaactcctttacaaactgtgaaagctgcgaatgtgtcctactacaaaaataaaccttcaatttcttctcctcttcctcttc |
20519 |
T |
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| Q |
340 |
ttcatc |
345 |
Q |
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|||||| |
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| T |
20520 |
ttcatc |
20525 |
T |
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