View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_2 (Length: 611)
Name: NF11515_low_2
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 7 - 594
Target Start/End: Complemental strand, 37096179 - 37095592
Alignment:
| Q |
7 |
aaaggcaactgattcttatggaccggcagtcgagggattatcttctgaaaaatataaaatttggagcttttaatgaaacactgagagcttatactttata |
106 |
Q |
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| T |
37096179 |
aaaggcaactgattcttatggaccggcagtcgagggattatcttctgaaaaatataaaatttggagcttttaatgaaacactgagagcttatactttata |
37096080 |
T |
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| Q |
107 |
aaaccatatacaattgaattcaaatattctatttaagatgaaggaagggtttcattactcaccaactaacataggatcaatatgttcnnnnnnncttgca |
206 |
Q |
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| T |
37096079 |
aaaccatatacaattgaattcaaatattctatttaagatgaaggaagggtttcattactcaccaactaacataggatcaatatgttcaaaaaaacttgca |
37095980 |
T |
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| Q |
207 |
gaaactatcaaatagcaaagaataagcaccatccctttgaagtagtttgaagttccattctgcatttcgaaacaaagttcaagttgtaaggtttaaatgt |
306 |
Q |
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| T |
37095979 |
gaaactatcaaatagcaaagaataagcacaatccctttgaagtagtttgaagttccattctgcatttcgaaacaaagttcaagttgtaaggtttaaatgt |
37095880 |
T |
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| Q |
307 |
gattatccacttgttattgatactatcatggcatatatatagccaattacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgcca |
406 |
Q |
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| T |
37095879 |
gattatccacttgttattgatactatcatggcatatatatagccaattacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgcca |
37095780 |
T |
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| Q |
407 |
agtaaggactaactaaacaattaacactaatagtcctaacacagtaaagatcaagtctataaagatataactggttcatataagacattactgaagacaa |
506 |
Q |
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| T |
37095779 |
agtaaggactaactaaacaattaacactaatagtcctaacacagtaaagatcaagtctataaagatataagtggttcatataagacattactgaagacaa |
37095680 |
T |
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| Q |
507 |
aaacttagtacaaaatcatttgtagtatactcaacaaattacggagaaggaatttagttcagtgattgacttacttgcaacatgaagg |
594 |
Q |
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| T |
37095679 |
aaacttagtacaaaatcatttgtagtatactcaacaaattacggagaaggaatttagttcagtgattgacttacttgcaacatgaagg |
37095592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 444
Target Start/End: Original strand, 13051384 - 13051474
Alignment:
| Q |
354 |
tacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgccaagtaaggactaactaaacaattaacactaatagtccta |
444 |
Q |
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| T |
13051384 |
tacacaagggagtgatagtttatgtccttacttgcattacaagtaacatgctaagtaaggattaattacacaattaacaataatattccta |
13051474 |
T |
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