View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_21 (Length: 307)
Name: NF11515_low_21
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 13309525 - 13309295
Alignment:
| Q |
1 |
gggagaatgtatagaaagagagaaatgaaggatgagattaattcttttatgctgtcaaccaatcatgatccatcattagtatgatttttaaggtagatgt |
100 |
Q |
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| T |
13309525 |
gggagaatgtatagaaagagagaaatgaaggatgagattaattcttttatgctgtcaaccaatcatgatccatcattagtatgatttttaaggtagatgt |
13309426 |
T |
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| Q |
101 |
gtttaaattcaaatatctgtaatgatcaaatagttatgattacttgacatgtgaaaaatatttacattgtcgatgcatatcaacttaatccgtaaaagat |
200 |
Q |
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| T |
13309425 |
gtttaaattcaaatatctgtaatgatcaaatagttatgattacttgacatgtgaaaaatatttacattgtcgatgcatatcaacttaatccgtaaaagat |
13309326 |
T |
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| Q |
201 |
atgcacacgtcttctagcataatcatagtaa |
231 |
Q |
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| T |
13309325 |
atgcacacgtcttctagcataatcatagtaa |
13309295 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 27839491 - 27839429
Alignment:
| Q |
86 |
ttttaaggtagatgtgtttaaattcaaatatctgtaatgatcaaatagttatgattacttgaca |
149 |
Q |
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| T |
27839491 |
ttttaaggtagatatgattaaagtcaa-tatctgtaatgatctaatggttatgattaattgaca |
27839429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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