View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_24 (Length: 294)
Name: NF11515_low_24
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 27444126 - 27444402
Alignment:
| Q |
1 |
caagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaaatatgccgtcttaattaatttttgttaatttttgtcnnnnn |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27444126 |
caagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaaatatgccgtcttaattaatttttgttaatttttgtcaaaaa |
27444225 |
T |
|
| Q |
101 |
nnnnnnntaagtgcatgtatacaaatgaaacatatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaannnnnnn |
200 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27444226 |
taaaa--taagtgcatgtatacaaatgaa-cgtatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaattttttt |
27444322 |
T |
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| Q |
201 |
ataatttattgtcttgatgggtgtattatataggttatgctccttatgtcgtcatcagcatttaatcttgtcctttttct |
280 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27444323 |
ataatttattgtcttgatgggtttattatataggttatgctccttatgtcgtcatcagcatttaatcttgtcctttttct |
27444402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 27432484 - 27432298
Alignment:
| Q |
1 |
caagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaaatatgccgtcttaattaatttttgttaatttttgtcnnnnn |
100 |
Q |
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|||||||||| ||||||||||||||||| |||||| || ||| || | ||||||||||||||||||||||||||||| ||| |||||| |
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| T |
27432484 |
caagacccgattacgccatcaccttctgcccatcaaattaaacttcacgatcaaacaaaatatgccgtcttaattaatttatgtc----tttgtcaaaaa |
27432389 |
T |
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| Q |
101 |
nnnnnnntaagtgcatgtatacaaatgaaacatatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
193 |
Q |
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| T |
27432388 |
taaaa--taagtgcatgtatacaaatgaaacgtatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
27432298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27220737 - 27220679
Alignment:
| Q |
1 |
caagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaa |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
27220737 |
caagacccgactacgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27220679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27214775 - 27214717
Alignment:
| Q |
1 |
caagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaa |
59 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
27214775 |
caagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27214717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27207404 - 27207362
Alignment:
| Q |
1 |
caagacccgactacgccatcaccttctgtccatcagcttgaac |
43 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
27207404 |
caagacccgactatgcaatcaccttctgcccatcagcttgaac |
27207362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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