View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_26 (Length: 285)
Name: NF11515_low_26
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 2462730 - 2462510
Alignment:
| Q |
53 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
152 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462730 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2462631 |
T |
|
| Q |
153 |
acacgttgtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
252 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462630 |
acacgttgtgagtttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
2462531 |
T |
|
| Q |
253 |
cccacaacctcactgcatctg |
273 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
2462530 |
cccacaacttcactgcatctg |
2462510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 3063274 - 3063487
Alignment:
| Q |
60 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
|
| Q |
160 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaa |
259 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaa |
3063473 |
T |
|
| Q |
260 |
cctcactgcatctg |
273 |
Q |
| |
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| |||||||||||| |
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| T |
3063474 |
cttcactgcatctg |
3063487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 2466775 - 2466558
Alignment:
| Q |
53 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
152 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466775 |
cacttagtatggcttttcaccaa---agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2466679 |
T |
|
| Q |
153 |
acacgttgtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2466678 |
acacgttgtgagtttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
2466579 |
T |
|
| Q |
253 |
cccacaacctcactgcatctg |
273 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
2466578 |
cccacaacttcactgcatctg |
2466558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 50 - 276
Target Start/End: Complemental strand, 2458154 - 2457931
Alignment:
| Q |
50 |
atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat |
149 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||| |
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|
| T |
2458154 |
atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacat |
2458058 |
T |
|
| Q |
150 |
ccaacacgttgtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcat |
249 |
Q |
| |
|
|||| ||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |
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|
| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcat |
2457958 |
T |
|
| Q |
250 |
tcacccacaacctcactgcatctgtgc |
276 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
2457957 |
tcacccacaacctcactgcatctgtgc |
2457931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 265
Target Start/End: Complemental strand, 2470100 - 2469891
Alignment:
| Q |
53 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
152 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||| |
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|
| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatta---catttcactttggcacatcca |
2470004 |
T |
|
| Q |
153 |
acacgttgtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
252 |
Q |
| |
|
| ||||||| |||||||||||| |||||||| || |||||||||| || |||| |||||||| |||||| |||||||||||| | ||| |||| || |
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|
| T |
2470003 |
atccgttgtgtgtttctccaaaccacctgagtgtagtggccacacatttcaccattagcacatgaattactactataatcatagtagggtttttcatcca |
2469904 |
T |
|
| Q |
253 |
cccacaacctcac |
265 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
2469903 |
cccacaacttcac |
2469891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 2474368 - 2474236
Alignment:
| Q |
56 |
ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca |
155 |
Q |
| |
|
||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| | |
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|
| T |
2474368 |
ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata |
2474272 |
T |
|
| Q |
156 |
cgttgtgagtttctccaaacaacctgagtataatgg |
191 |
Q |
| |
|
|||| || |||||||||||| ||||||||||||||| |
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|
| T |
2474271 |
cgttttgtgtttctccaaaccacctgagtataatgg |
2474236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
| Q |
87 |
ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga |
163 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga |
2471017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 2486576 - 2486510
Alignment:
| Q |
125 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg |
191 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
2486576 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataatgg |
2486510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 18016046 - 18015833
Alignment:
| Q |
60 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
|
| Q |
160 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18015946 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaa |
18015847 |
T |
|
| Q |
260 |
cctcactgcatctg |
273 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
18015846 |
cttcactgcatctg |
18015833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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