View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_27 (Length: 271)
Name: NF11515_low_27
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_27 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 20933691 - 20933439
Alignment:
| Q |
19 |
atacataagtgcttatgataaaaactacaaattaggtgtttatccaaacagacccaaagtgtcataatttggcacgagaacaaatataatgttgtgtgat |
118 |
Q |
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| T |
20933691 |
atacataagtgcttatgataaaaactacaaataaggtgtttatccaaacagacccatagtgtcataatttggcacgagaacaaatataatgttgtgtgat |
20933592 |
T |
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| Q |
119 |
aggtcagtccatacagaattaacacatgaaatgcaaattgaactcagaaagaaattagagagttaccatgtgaagttaccgattgagtagttccaggaaa |
218 |
Q |
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| T |
20933591 |
aggtcagtccatacagaattaacacatgaaatgcaaattgaactcagaaagaaattagagagttaccatgtgaagttaccgattgagtagttccaggaaa |
20933492 |
T |
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| Q |
219 |
attatatgcaataatattctgaatgtgttacgcctacgacaaacaaaaacatt |
271 |
Q |
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| T |
20933491 |
ataatatgcaataatattctgaatgtgttacgcctacgacaaacaaaaacatt |
20933439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 20952210 - 20952107
Alignment:
| Q |
135 |
aattaacacatgaaatgcaaattgaactcagaaagaaattagagagttaccatgtgaagttaccgattgagtagttccaggaaaattatatgcaataata |
234 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| | |||||||| |
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| T |
20952210 |
aattaaaacatggaatgcaaattgaactcagaaagaaattagagaattaccatgagaagttaccgattgagaagttccaggaaaattagacgcaataatc |
20952111 |
T |
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| Q |
235 |
ttct |
238 |
Q |
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|||| |
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| T |
20952110 |
ttct |
20952107 |
T |
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