View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_34 (Length: 243)
Name: NF11515_low_34
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 52384040 - 52383801
Alignment:
| Q |
1 |
tgagatgaacaaatgacaaaagaaaagtagttggttatattgtcgtacaaatttgaacnnnnnnnngtgatcgactgctttaagtctagatagttgttgg |
100 |
Q |
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| T |
52384040 |
tgagataaacaaatgacaaaagaaaagtagttggttatattgtcctacaaatttgaacaaaaaaaagtgatcgactgctttaagtctagatagttgttgg |
52383941 |
T |
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| Q |
101 |
tcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaatagatgatatacattataagttagtatcgaattgagttcaacaagctaa |
200 |
Q |
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| T |
52383940 |
tcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaata---gatatacattataagttagtatcgaattgagttcaacaagctaa |
52383844 |
T |
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| Q |
201 |
actgaatctctgttggctccatgcatgattctacagactgctt |
243 |
Q |
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| T |
52383843 |
actgaatctctgttggctccatgcacgattctacagactgctt |
52383801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 25093449 - 25093409
Alignment:
| Q |
106 |
atagatcataatgaatcagaattcaaaatgagattcatgtc |
146 |
Q |
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| T |
25093449 |
atagatcataatgaatcaacattcaagatgagattcatgtc |
25093409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 35590583 - 35590629
Alignment:
| Q |
110 |
atcataatgaatcagaattcaaaatgagattcatgtcgaaaatagat |
156 |
Q |
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| T |
35590583 |
atcataatgaatcagaattcaagatgagaatcgtgtcaaaaatagat |
35590629 |
T |
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