View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11515_low_36 (Length: 240)
Name: NF11515_low_36
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_36 |
 | |
|
| [»] chr1 (9 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 27432784 - 27432562
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432784 |
tcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
27432685 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432684 |
agtgataggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
27432585 |
T |
|
| Q |
218 |
aaatgtccacccacagactactc |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27432584 |
aaatgtccacccacagactactc |
27432562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 27215075 - 27214856
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
27215075 |
tcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctcca |
27214976 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214975 |
agtgataggtactgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
27214876 |
T |
|
| Q |
218 |
aaatgtccacccacagacta |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27214875 |
aaatgtccacccacagacta |
27214856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 27443826 - 27444045
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
27443826 |
tcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctcca |
27443925 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443926 |
agtgataggtactgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
27444025 |
T |
|
| Q |
218 |
aaatgtccacccacagacta |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27444026 |
aaatgtccacccacagacta |
27444045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 27221037 - 27220815
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221037 |
tcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
27220938 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
||| || ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27220937 |
agttattggtactgatgggagtgtgattgcctgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagatttcaatactgaagaa |
27220838 |
T |
|
| Q |
218 |
aaatgtccacccacagactactc |
240 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
27220837 |
aaatgtccacccacaaactactc |
27220815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 27207704 - 27207482
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
|||| ||||| ||||| |||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
27207704 |
tcaatgtgcccatgtccgtaatgccacaaggtgggagtggtgactgcaaaaccgctagttgtcctaggaacattaatgttgtgtgtccttcagagctcca |
27207605 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
||||| ||| ||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27207604 |
ggtgattggttctgatgggagtgtgtttgcttgtaagagcgcttgtttggctttaaaggaagataaatattgttgtcgtggagatttcaatactgaagaa |
27207505 |
T |
|
| Q |
218 |
aaatgtccacccacagactactc |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27207504 |
aaatgtccacccacagactactc |
27207482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 27388998 - 27388776
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || ||||| || |||||| |||| || ||||||| ||||| || |||||| || | ||||| || |
|
|
| T |
27388998 |
tcaacgtgccaatgtccgtaactccacaaggcggaagtggcgattgcaaatcctctagctgtccagcaaacatcaactctgtgtgtcccgcggagcttca |
27388899 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
| | | |||| ||||||| | ||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| || ||| ||||| | | |
|
|
| T |
27388898 |
attaaaaggttctgatggaagtgtcgttgcttgtaagagtgcttgtttggcttttaataccgatcaatattgttgtcgtggaagtttcaacaccgaggca |
27388799 |
T |
|
| Q |
218 |
aaatgtccacccacagactactc |
240 |
Q |
| |
|
| ||||||||||||| ||||||| |
|
|
| T |
27388798 |
acatgtccacccacaaactactc |
27388776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 27409954 - 27409744
Alignment:
| Q |
18 |
tcaacgtgccaatgtctgtaacaccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctcca |
117 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||| ||| |||||| || | |||||||||| || || || | |||||| || |||| || || |
|
|
| T |
27409954 |
tcaacgtgccaatttttgtaactccacaaggtgggaatggcccttgcaaagccgctagttgtccagcaaatatcaacgctgtgtgtcccgcagaacttca |
27409855 |
T |
|
| Q |
118 |
agtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
217 |
Q |
| |
|
||| | |||| ||||||||| ||| |||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
27409854 |
agtaaaaggttctgatgggagtgtcgttgcttgtaagagtgcttgcttggcttttaatacagatcaatattgttgtcgtggaagttacaataccgaagcg |
27409755 |
T |
|
| Q |
218 |
aaatgtccacc |
228 |
Q |
| |
|
| ||||||||| |
|
|
| T |
27409754 |
acatgtccacc |
27409744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 20952617 - 20952530
Alignment:
| Q |
85 |
gaacattaatgttgtgtgcccttcagagctccaagtgataggtactgatgggaatgtggttgcttgtaagagtgcttgtttggcttta |
172 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||| ||| ||||||||| |||||| |||||||| || ||||||||||||||| |
|
|
| T |
20952617 |
gaacattaatattgtgtgtccttaagagctccaagtgaccggttctgatgggagtgtggtggcttgtaaaagcgcttgtttggcttta |
20952530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 27416234 - 27416296
Alignment:
| Q |
144 |
ttgcttgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagattaca |
206 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| | || |||||||||||||||||||||||| |
|
|
| T |
27416234 |
ttgcttgtaagagtgcttgcatggcttttaatacatatcaatattgttgtcgtggagattaca |
27416296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University