View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11515_low_37 (Length: 240)
Name: NF11515_low_37
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_37 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 38829216 - 38829454
Alignment:
| Q |
18 |
tttagcattgtttgttagttgatttagtcaagtttgtt------------tttccttatttttagctagaacgtgggctgt--agcttgttacagcacgt |
103 |
Q |
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| T |
38829216 |
tttagcattgtttgttagttgatttagtcaagtttgttagtcaaatttgttttccttatttttcgctagaacgtgggctgtgtagcatgttacaacacgc |
38829315 |
T |
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| Q |
104 |
ctgttttgcttctatttatttagcagcactttcatattcaataata--agtcattcccataactgttacttgctttctctatagttcttattgcatctaa |
201 |
Q |
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| T |
38829316 |
ctgttttgcttcgatttattttgcagcactttcatattgaataaaacaagtcattcccataattgttacttgctttctctatagttcttattgcatctaa |
38829415 |
T |
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| Q |
202 |
cattctggtatctagagcagtgacctgagagatgggttc |
240 |
Q |
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| T |
38829416 |
cattctggtatctagagcagtgacctgagagatgggttc |
38829454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 38832449 - 38832660
Alignment:
| Q |
18 |
tttagcattgtttgttagttgatttagtcaagtttgtt------------tttcctta----tttttagctagaacgtgggctgtagcttgttacagcac |
101 |
Q |
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| T |
38832449 |
tttagcattgtttgttagttgatttagtcaagtttgttagtcaaatttgttttccttaattatttttagctagaacgtgggctgtagcttgttacagcac |
38832548 |
T |
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| Q |
102 |
gtctgttttgcttctatttatttagcagcactttcatattcaataata----------agtcattcccataactgttacttgctttctctatagttctta |
191 |
Q |
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| T |
38832549 |
gtctgtgtcgcttctatttattttgcagcactttcatattgaataaaacaagtcaacgagtcattcccataactgttacttgctttctctatagttctta |
38832648 |
T |
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| Q |
192 |
ttgcatctaaca |
203 |
Q |
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| T |
38832649 |
ttgcatctaaca |
38832660 |
T |
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