View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11515_low_38 (Length: 240)

Name: NF11515_low_38
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11515_low_38
NF11515_low_38
[»] chr8 (9 HSPs)
chr8 (1-226)||(9633186-9633415)
chr8 (1-89)||(16967512-16967600)
chr8 (5-80)||(34181564-34181639)
chr8 (1-71)||(30920416-30920486)
chr8 (7-90)||(1364182-1364265)
chr8 (1-74)||(29358672-29358745)
chr8 (182-226)||(40645709-40645753)
chr8 (182-222)||(16448788-16448828)
chr8 (34-90)||(16967449-16967505)
[»] chr7 (5 HSPs)
chr7 (5-94)||(40800098-40800184)
chr7 (8-74)||(28923021-28923087)
chr7 (182-223)||(33901146-33901187)
chr7 (22-74)||(28039706-28039758)
chr7 (182-223)||(45025702-45025743)
[»] chr3 (3 HSPs)
chr3 (7-96)||(34307980-34308069)
chr3 (182-223)||(31376174-31376215)
chr3 (5-74)||(45868966-45869035)
[»] chr6 (4 HSPs)
chr6 (7-74)||(31586077-31586143)
chr6 (21-73)||(1941082-1941134)
chr6 (181-224)||(17598109-17598152)
chr6 (181-222)||(8052965-8053006)
[»] chr5 (3 HSPs)
chr5 (5-79)||(6380580-6380654)
chr5 (182-223)||(8680649-8680690)
chr5 (182-222)||(13664945-13664985)
[»] chr4 (5 HSPs)
chr4 (177-223)||(42160081-42160127)
chr4 (8-72)||(29065671-29065736)
chr4 (182-223)||(29686399-29686440)
chr4 (187-223)||(1100900-1100936)
chr4 (182-222)||(48195999-48196039)
[»] chr1 (3 HSPs)
chr1 (1-74)||(39217653-39217726)
chr1 (92-139)||(25700942-25700989)
chr1 (182-223)||(43850948-43850989)
[»] chr2 (3 HSPs)
chr2 (22-90)||(41105058-41105126)
chr2 (182-223)||(6971678-6971719)
chr2 (93-141)||(16676540-16676588)
[»] scaffold0767 (1 HSPs)
scaffold0767 (185-222)||(5304-5341)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9633415 - 9633186
Alignment:
Q  1 tatctagactataatataagctaaatacgtcatttattcattgaacatgaa---aaaata-atcttctcttatatttatgaccgaagggagtattattga 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| || |||||||||||||| |||||||||||||||||||||    
T  9633415 tatctagactataatataagctaaatacgtcatttattcattgaacatgaagaaaaaatatatattctcttatatttaggaccgaagggagtattattga 9633316  T
Q  97 tacttgtcccacacatcaaagtttatttgtatgattttgagttaccaaattcataacttttatgttaaacccagtctttctaacttacttcctccggtca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||     
T  9633315 tacttgtcccacacatcaaagtttatttgtatgattttgagttaccaaattcataacttttatgttaaacccagtctttctaacttacttctttcggtcc 9633216  T
Q  197 ttcttataagaaacatttgactttttaagt 226  Q
    ||||||||||||||||||||||||||||||    
T  9633215 ttcttataagaaacatttgactttttaagt 9633186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16967512 - 16967600
Alignment:
Q  1 tatctagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgaccgaagggagta 89  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||  |||||||| |||||||||||||||||| ||||| ||||||||    
T  16967512 tatctagactataatatgaactaaatacatcatttattcaatgaatttgaaaaaagaatcttctcttatatttaggaccggagggagta 16967600  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 34181564 - 34181639
Alignment:
Q  5 tagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgaccg 80  Q
    ||||||||||||||| |||||||| ||||||||||| ||||  |||||||  |||||||||||||||||| |||||    
T  34181564 tagactataatataaactaaatacatcatttattcaatgaatttgaaaaatgaatcttctcttatatttaggaccg 34181639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30920486 - 30920416
Alignment:
Q  1 tatctagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatat 71  Q
    |||| |||||||||||||| |||||||| | ||||||||| ||||| ||||||||||||||| ||||||||    
T  30920486 tatcaagactataatataaactaaatacataatttattcaatgaacctgaaaaaataatcttttcttatat 30920416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 1364182 - 1364265
Alignment:
Q  7 gactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgaccgaagggagtat 90  Q
    ||||| ||| ||| |||||||| | ||||||||| ||||| |  ||||| |||||||||||||||||| ||||| |||||||||    
T  1364182 gactacaatgtaaactaaatacattatttattcaatgaacctacaaaaagaatcttctcttatatttaggaccggagggagtat 1364265  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29358672 - 29358745
Alignment:
Q  1 tatctagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattta 74  Q
    ||||||||||||||||||| |||||||| |||||||| || || |  | |||||| |||||||||||| |||||    
T  29358672 tatctagactataatataaactaaatacatcatttatacaatgtatctaaaaaaagaatcttctcttaaattta 29358745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 40645709 - 40645753
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgactttttaagt 226  Q
    |||||||||| ||| || |||||||||||||||||||||||||||    
T  40645709 tacttcctccagtccttattataagaaacatttgactttttaagt 40645753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 16448788 - 16448828
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttt 222  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  16448788 tacttcctccggtcctatttataagaaacatttgacttttt 16448828  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 16967505 - 16967449
Alignment:
Q  34 ttattcattgaacatgaaaaaataatcttctcttatatttatgaccgaagggagtat 90  Q
    ||||||| ||||| | |||||| | |||||||||||||||| ||||| |||||||||    
T  16967505 ttattcaatgaacctaaaaaaagattcttctcttatatttaggaccggagggagtat 16967449  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 40800098 - 40800184
Alignment:
Q  5 tagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgaccgaagggagtattatt 94  Q
    ||||||||||| ||| |||||||| ||||||||||| ||||| | |||||| |||||||||||||||    ||||| |||||||||||||    
T  40800098 tagactataatgtaatctaaatacatcatttattcaatgaacctaaaaaaagaatcttctcttatat---ggaccggagggagtattatt 40800184  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 28923087 - 28923021
Alignment:
Q  8 actataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattta 74  Q
    |||||||||||| |||||||| ||||||||||| | ||| ||||||| ||||||||| |||||||||    
T  28923087 actataatataaactaaatacatcatttattcaataaacttgaaaaattaatcttcttttatattta 28923021  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 33901187 - 33901146
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  33901187 tacttcctccggtctttattataagaaacatttgacttttta 33901146  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 28039758 - 28039706
Alignment:
Q  22 taaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattta 74  Q
    ||||||| ||||||||||| ||||  ||||||||||||| |||||||||||||    
T  28039758 taaatacatcatttattcaatgaatttgaaaaaataatcctctcttatattta 28039706  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 45025743 - 45025702
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||||||||||||| || ||||||||||||||||| ||||||    
T  45025743 tacttcctccggtctttattataagaaacatttgatttttta 45025702  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 34308069 - 34307980
Alignment:
Q  7 gactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgaccgaagggagtattattga 96  Q
    ||||||||||||| |||||||  ||||||||||| ||||| | |||||  |||||||||||| ||||| ||||| ||| ||||| |||||    
T  34308069 gactataatataaactaaatatatcatttattcaatgaacctaaaaaatgaatcttctcttacatttaggaccggaggaagtatgattga 34307980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 31376174 - 31376215
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||| ||||||||| || ||||||||||||||||||||||||    
T  31376174 tactccctccggtccttattataagaaacatttgacttttta 31376215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 45869035 - 45868966
Alignment:
Q  5 tagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattta 74  Q
    ||||||||||||| | |||||||| ||||||||| | ||||  | |||||| ||||||||||| ||||||    
T  45869035 tagactataatatgaactaaatacatcatttatttaatgaatttaaaaaaaaaatcttctcttgtattta 45868966  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 31586143 - 31586077
Alignment:
Q  7 gactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattta 74  Q
    ||||| ||||||| |||| ||| ||||||||||| ||||||| |||||| ||||||||||||||||||    
T  31586143 gactacaatataaactaa-tacatcatttattcaatgaacataaaaaaagaatcttctcttatattta 31586077  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 1941134 - 1941082
Alignment:
Q  21 ctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattt 73  Q
    |||||||| ||||||||||| ||||| |||||| | |||||||||||||||||    
T  1941134 ctaaatacatcatttattcaatgaacttgaaaagagaatcttctcttatattt 1941082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 17598109 - 17598152
Alignment:
Q  181 ttacttcctccggtcattcttataagaaacatttgactttttaa 224  Q
    ||||||||||||||| ||||||||||||| | ||||||||||||    
T  17598109 ttacttcctccggtccttcttataagaaaaaattgactttttaa 17598152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 8053006 - 8052965
Alignment:
Q  181 ttacttcctccggtcattcttataagaaacatttgacttttt 222  Q
    |||||||||||||||||  |||||||||| ||||||||||||    
T  8053006 ttacttcctccggtcatatttataagaaatatttgacttttt 8052965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 6380580 - 6380654
Alignment:
Q  5 tagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgacc 79  Q
    |||| |||||||||| |||||||| | ||||||||| ||||| | | |||| |||||||||||||||||| ||||    
T  6380580 tagattataatataaactaaatacattatttattcaatgaacctaataaaagaatcttctcttatatttaagacc 6380654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 8680690 - 8680649
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||| ||||||||| || ||||||||||||||||||||||||    
T  8680690 tactccctccggtccttattataagaaacatttgacttttta 8680649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 13664945 - 13664985
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttt 222  Q
    |||||| |||||||||  |||||||||||||||||||||||    
T  13664945 tacttcatccggtcatatttataagaaacatttgacttttt 13664985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 42160127 - 42160081
Alignment:
Q  177 taacttacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  42160127 taacctacttcctccggtctttattataagaaacatttgacttttta 42160081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 29065736 - 29065671
Alignment:
Q  8 actataatataagctaaatacgtcatttattcattgaacatgaa-aaaataatcttctcttatatt 72  Q
    |||||||||||| ||||| ||||| |||||||||| ||| |||| ||| |||||||||| ||||||    
T  29065736 actataatataaactaaacacgtcttttattcattaaacctgaataaattaatcttctcctatatt 29065671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 29686399 - 29686440
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||| ||||||||| || ||||||||||||||||||||||||    
T  29686399 tactccctccggtccttattataagaaacatttgacttttta 29686440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 1100900 - 1100936
Alignment:
Q  187 cctccggtcattcttataagaaacatttgacttttta 223  Q
    ||||||||| || ||||||||||||||||||||||||    
T  1100900 cctccggtccttattataagaaacatttgacttttta 1100936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 48196039 - 48195999
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttt 222  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  48196039 tacttcctccggtcctatttataagaaacatttgacttttt 48195999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39217653 - 39217726
Alignment:
Q  1 tatctagactataatataagctaaatacgtcatttattcattgaacatgaaaaaataatcttctcttatattta 74  Q
    |||||||||||||  |||   ||||||| ||||||||||| ||| | ||||||||||||||||| |||||||||    
T  39217653 tatctagactatagcatacattaaatacatcatttattcaatgatcctgaaaaaataatcttcttttatattta 39217726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 25700989 - 25700942
Alignment:
Q  92 attgatacttgtcccacacatcaaagtttatttgtatgattttgagtt 139  Q
    ||||||| |||||||||||||| ||||||||| || ||||||||||||    
T  25700989 attgatatttgtcccacacatctaagtttattagtgtgattttgagtt 25700942  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 43850948 - 43850989
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||||||||||||| || ||||||||||| ||||||||||||    
T  43850948 tacttcctccggtctttattataagaaacttttgacttttta 43850989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 41105126 - 41105058
Alignment:
Q  22 taaatacgtcatttattcattgaacatgaaaaaataatcttctcttatatttatgaccgaagggagtat 90  Q
    ||||||| ||||||||||| ||||| |||||||| ||  |||||||||||||| ||||  |||||||||    
T  41105126 taaatacatcatttattcaatgaacctgaaaaaagaacattctcttatatttaggaccagagggagtat 41105058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 6971719 - 6971678
Alignment:
Q  182 tacttcctccggtcattcttataagaaacatttgacttttta 223  Q
    |||||||||| ||| || ||||||||||||||||||||||||    
T  6971719 tacttcctcctgtccttattataagaaacatttgacttttta 6971678  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 16676540 - 16676588
Alignment:
Q  93 ttgatacttgtcccacacatcaaagtttatttgtatgattttgagttac 141  Q
    |||||||||| |||||||||  ||||||||| || ||||||||||||||    
T  16676540 ttgatacttgccccacacatataagtttattggtgtgattttgagttac 16676588  T

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Target: scaffold0767 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 5341 - 5304
Alignment:
Q  185 ttcctccggtcattcttataagaaacatttgacttttt 222  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  5341 ttcctccggtcctacttataagaaacatttgacttttt 5304  T

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