View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11515_low_43 (Length: 201)
Name: NF11515_low_43
Description: NF11515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11515_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 44891167 - 44891335
Alignment:
| Q |
18 |
ttactcactctcttgactacacgatgtaggactaactagtattgttcagcaccaatttgcttcgtggactcacttggtagactatattcagtctttcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44891167 |
ttactcactctcttgactacacgatgtaggactaactagtattgttcagcaccaacttgcttcgtggactcacttggtagactatattcagtctttcttc |
44891266 |
T |
|
| Q |
118 |
tcttatctatattcgttttcttccaatgttcttcactacatccatcattaagaatatcagaatattcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
44891267 |
tcttatctatattcgttttcttccaatgttcttcaatacatccatcattaagagtaccagaatattcat |
44891335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University